Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 2.8e-196 688.3 328 100.0
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.5e-76 288.5 321 48.6
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 1.1e-75 287.7 321 48.6
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 1.4e-75 287.3 329 48.9
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.9e-75 287.0 334 49.4
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 2.5e-75 286.6 321 48.6
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 3.2e-75 286.2 321 46.7
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 5.5e-75 285.4 320 48.8
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 5.5e-75 285.4 334 47.3
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 7.1e-75 285.0 322 47.5
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 9.3e-75 284.6 321 47.7
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.6e-74 283.9 322 48.4
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.6e-74 283.9 310 49.7
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 1.6e-74 283.9 321 48.6
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.1e-74 283.5 321 48.0
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 2.1e-74 283.5 310 50.0
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 3.5e-74 282.7 330 48.2
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 6.0e-74 282.0 319 48.0
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 6.0e-74 282.0 320 47.8
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.0e-73 281.2 320 48.8
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 1.3e-73 280.8 322 48.8
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 1.8e-73 280.4 321 48.6
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.1e-73 278.9 322 47.8
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 6.7e-73 278.5 321 47.7
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 8.7e-73 278.1 324 48.5
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 8.7e-73 278.1 324 48.5
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 8.7e-73 278.1 320 48.1
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 8.7e-73 278.1 321 47.0
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 1.1e-72 277.7 311 47.6
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.1e-72 277.7 320 47.5
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.9e-72 276.9 333 45.6
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 2.5e-72 276.6 320 45.9
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 2.5e-72 276.6 283 51.6
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 2.5e-72 276.6 320 48.8
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 3.3e-72 276.2 321 47.0
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 3.3e-72 276.2 321 46.7
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 4.3e-72 275.8 333 47.1
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 4.3e-72 275.8 310 48.1
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 5.7e-72 275.4 311 50.2
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 7.4e-72 275.0 310 49.7
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 7.4e-72 275.0 320 47.2
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 9.6e-72 274.6 320 46.2
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 1.3e-71 274.2 336 45.8
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.3e-71 274.2 330 47.0
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 1.3e-71 274.2 321 47.7
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 1.3e-71 274.2 333 46.8
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 1.6e-71 273.9 320 46.6
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 1.6e-71 273.9 320 45.0
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 2.1e-71 273.5 320 46.6
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 2.8e-71 273.1 322 46.9
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 2.8e-71 273.1 311 48.2
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 3.7e-71 272.7 320 46.6
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 3.7e-71 272.7 320 46.6
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 3.7e-71 272.7 311 48.6
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 3.7e-71 272.7 312 48.1
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 4.8e-71 272.3 320 47.8
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 6.3e-71 271.9 320 46.6
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 8.2e-71 271.6 334 45.8
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 8.2e-71 271.6 310 48.1
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.1e-70 271.2 322 46.9
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 1.4e-70 270.8 320 47.2
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 1.4e-70 270.8 320 46.2
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.4e-70 270.8 320 46.2
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.4e-70 270.8 320 46.2
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.4e-70 270.8 320 46.2
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.8e-70 270.4 310 48.7
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.8e-70 270.4 320 46.2
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.8e-70 270.4 320 47.5
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 3.1e-70 269.6 320 46.2
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 3.1e-70 269.6 319 47.3
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 3.1e-70 269.6 320 46.2
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 3.1e-70 269.6 320 44.7
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 6.9e-70 268.5 320 45.9
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 6.9e-70 268.5 320 45.9
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 6.9e-70 268.5 334 44.3
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 6.9e-70 268.5 321 46.7
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 9.0e-70 268.1 320 44.1
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 1.2e-69 267.7 291 50.2
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 2.0e-69 266.9 322 45.7
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 2.6e-69 266.5 319 46.4
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 2.6e-69 266.5 321 44.9
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.6e-69 266.5 312 47.1
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 3.4e-69 266.2 321 45.8
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 3.4e-69 266.2 320 46.2
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 4.5e-69 265.8 321 46.1
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 4.5e-69 265.8 310 47.4
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 7.6e-69 265.0 334 44.9
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 1.0e-68 264.6 327 45.0
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 1.0e-68 264.6 327 45.0
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 1.0e-68 264.6 327 45.0
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.0e-68 264.6 320 46.6
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 2.2e-68 263.5 329 43.2
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 2.2e-68 263.5 320 45.6
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 2.2e-68 263.5 321 45.2
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 2.9e-68 263.1 315 45.4
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 3.8e-68 262.7 323 46.7
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 1.1e-67 261.2 345 42.9
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 1.9e-67 260.4 283 48.1
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 1.9e-67 260.4 324 46.0
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 3.2e-67 259.6 310 45.2
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 4.2e-67 259.2 319 44.5
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 5.5e-67 258.8 311 46.6
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 9.3e-67 258.1 325 44.3
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 1.2e-66 257.7 311 47.3
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 6.1e-66 255.4 312 46.8
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 1.0e-65 254.6 320 44.1
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 3.9e-65 252.7 322 44.7
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 5.1e-65 252.3 321 44.9
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 1.1e-64 251.1 289 49.1
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 3.1e-62 243.0 312 41.7
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 4.1e-62 242.7 285 48.4
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.2e-61 241.1 285 46.0
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 2.6e-61 240.0 300 44.3
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 2.6e-61 240.0 321 42.4
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 3.4e-61 239.6 320 42.5
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 3.4e-61 239.6 317 43.5
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 3.4e-61 239.6 324 43.2
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 4.5e-61 239.2 289 47.1
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 5.9e-61 238.8 285 46.7
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 7.7e-61 238.4 287 46.7
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.3e-60 237.7 284 48.6
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 3.2e-59 233.0 304 43.4
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 9.4e-59 231.5 304 44.7
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 3.6e-58 229.6 285 45.3
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 5.3e-54 215.7 283 46.6
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 3.8e-52 209.5 314 37.6
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 3.2e-51 206.5 310 40.0
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 4.2e-51 206.1 277 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 3.9e-49 199.5 320 35.6
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.2e-49 199.1 306 40.2
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 1.7e-47 194.1 240 47.5
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 9.1e-46 188.3 257 43.2
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 1.0e-44 184.9 273 42.1
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 5.7e-40 169.1 109 72.5
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 7.0e-38 162.2 94 77.7
Cpa.g.sc352.2 Carica papaya HOM05D003542 ORTHO05D018761 3.5e-37 159.8 192 47.4
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 3.5e-37 159.8 102 74.5
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.0e-36 158.3 102 70.6
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 1.0e-36 158.3 102 70.6
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.5e-35 152.5 102 67.6
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 1.2e-34 151.4 301 32.2
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 4.0e-33 146.4 102 62.7
TAR374G0820 Trochodendron aralioides HOM05D003542 ORTHO05D018761 3.1e-30 136.7 192 43.2
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 4.1e-30 136.3 282 33.3
CDE04G2998 Ceratophyllum demersum HOM05D003542 ORTHO05D018761 2.2e-28 130.6 95 62.1
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.5e-27 127.9 155 45.2
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.4e-24 116.7 322 28.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 9.8e-24 115.2 104 52.9
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.4e-22 110.5 318 27.7
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.5e-21 106.3 300 27.0
BcaB06g28849 Brassica carinata HOM05D003542 ORTHO05D018761 5.6e-19 99.4 57 70.2
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 2.2e-15 87.4 52 71.2
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.7e-15 86.7 287 25.8
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 1.6e-13 81.3 57 64.9
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.7e-13 80.5 51 72.5
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 5.6e-11 72.8 110 40.0
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.1e-09 67.0 107 36.4
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.7e-07 60.1 106 32.1
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.1e-06 56.6 201 25.9
arahy.Tifrunner.gnm1.ann1.97RZQE Arachis hypogaea HOM05D002940 ORTHO05D003344 9.2e-06 55.5 32 68.8


User provided reference genes

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