Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g04284_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 5.8e-118 427.6 212 100.0
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 9.4e-28 127.9 136 50.0
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 2.7e-27 126.3 139 48.9
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 3.6e-27 125.9 142 47.9
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 4.7e-27 125.6 139 49.6
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 8.0e-27 124.8 136 50.0
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 1.0e-26 124.4 145 46.9
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 1.0e-26 124.4 143 49.0
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.0e-26 124.4 145 46.9
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 1.4e-26 124.0 142 47.2
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 1.4e-26 124.0 145 46.2
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 1.8e-26 123.6 145 46.2
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 1.8e-26 123.6 145 46.2
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 1.8e-26 123.6 145 46.2
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.8e-26 123.6 145 45.5
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.8e-26 123.6 142 47.9
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 1.8e-26 123.6 142 47.2
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 2.3e-26 123.2 145 46.2
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 2.3e-26 123.2 154 45.5
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 3.0e-26 122.9 139 46.8
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 3.0e-26 122.9 145 45.5
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 3.0e-26 122.9 133 49.6
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 3.0e-26 122.9 145 46.2
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 3.0e-26 122.9 145 45.5
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 3.0e-26 122.9 140 47.1
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 4.0e-26 122.5 142 46.5
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 5.2e-26 122.1 139 46.8
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 6.8e-26 121.7 145 45.5
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 6.8e-26 121.7 145 45.5
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 6.8e-26 121.7 145 45.5
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 6.8e-26 121.7 142 48.6
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 6.8e-26 121.7 145 46.2
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 6.8e-26 121.7 142 46.5
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 6.8e-26 121.7 139 47.5
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 6.8e-26 121.7 145 44.8
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 6.8e-26 121.7 142 46.5
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 6.8e-26 121.7 142 45.1
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 8.8e-26 121.3 142 46.5
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 8.8e-26 121.3 142 47.2
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 8.8e-26 121.3 142 47.2
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 8.8e-26 121.3 142 45.8
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 8.8e-26 121.3 142 45.8
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.2e-25 120.9 133 49.6
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.5e-25 120.6 139 46.8
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 1.5e-25 120.6 142 45.8
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.5e-25 120.6 145 44.8
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 2.0e-25 120.2 145 44.8
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.0e-25 120.2 136 48.5
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 2.0e-25 120.2 143 46.2
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.6e-25 119.8 136 48.5
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 2.6e-25 119.8 145 44.8
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.6e-25 119.8 142 46.5
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 2.6e-25 119.8 145 45.5
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 3.4e-25 119.4 145 44.1
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 4.4e-25 119.0 142 47.2
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 4.4e-25 119.0 139 46.8
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 4.4e-25 119.0 145 44.8
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 5.7e-25 118.6 142 43.0
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 5.7e-25 118.6 136 46.3
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 5.7e-25 118.6 142 46.5
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 7.5e-25 118.2 142 45.8
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 7.5e-25 118.2 142 45.8
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 7.5e-25 118.2 142 45.8
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 9.8e-25 117.9 145 43.4
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 9.8e-25 117.9 159 41.5
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 9.8e-25 117.9 159 41.5
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 9.8e-25 117.9 159 41.5
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 1.3e-24 117.5 139 46.8
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 1.3e-24 117.5 179 39.7
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 1.7e-24 117.1 139 45.3
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 2.2e-24 116.7 139 44.6
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 2.2e-24 116.7 133 48.1
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 2.2e-24 116.7 145 42.8
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 2.8e-24 116.3 142 45.8
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 2.8e-24 116.3 142 43.7
Os03g0586300 Oryza sativa ssp. japonica HOM05D003542 ORTHO05D004799 2.8e-24 116.3 142 44.4
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 2.8e-24 116.3 142 44.4
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 2.8e-24 116.3 145 43.4
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 2.8e-24 116.3 145 43.4
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 2.8e-24 116.3 136 46.3
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 2.8e-24 116.3 142 45.8
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 3.7e-24 115.9 141 44.0
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 3.7e-24 115.9 142 42.3
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 3.7e-24 115.9 142 45.1
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 3.7e-24 115.9 142 42.3
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 4.8e-24 115.5 164 40.2
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 4.8e-24 115.5 145 43.4
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 4.8e-24 115.5 142 43.0
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 8.3e-24 114.8 146 44.5
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 8.3e-24 114.8 139 45.3
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.8e-23 113.6 142 42.3
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 3.1e-23 112.8 145 42.8
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 5.4e-23 112.1 162 41.4
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 7.0e-23 111.7 136 44.1
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 1.6e-22 110.5 136 41.9
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 2.7e-22 109.8 142 42.3
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 4.5e-22 109.0 142 43.0
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 5.9e-22 108.6 136 42.6
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 5.9e-22 108.6 133 43.6
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 1.0e-21 107.8 122 49.2
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 1.7e-21 107.1 169 40.2
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 6.5e-21 105.1 140 39.3
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 1.1e-20 104.4 164 37.8
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 5.5e-20 102.1 81 66.7
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 1.6e-19 100.5 137 38.7
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.1e-19 100.1 72 68.1
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 2.1e-19 100.1 81 65.4
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 2.7e-19 99.8 69 69.6
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 2.7e-19 99.8 69 71.0
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 3.6e-19 99.4 72 66.7
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 3.6e-19 99.4 72 66.7
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 3.6e-19 99.4 72 66.7
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 3.6e-19 99.4 69 71.0
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 4.7e-19 99.0 72 66.7
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 6.1e-19 98.6 72 66.7
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 6.1e-19 98.6 69 68.1
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 6.1e-19 98.6 72 66.7
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 6.1e-19 98.6 72 66.7
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 8.0e-19 98.2 72 65.3
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 8.0e-19 98.2 72 65.3
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.4e-18 97.4 72 65.3
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 1.4e-18 97.4 69 68.1
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 1.8e-18 97.1 72 63.9
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 1.8e-18 97.1 72 65.3
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 5.2e-18 95.5 88 53.4
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.2e-18 95.5 124 44.4
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 5.2e-18 95.5 72 62.5
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 5.2e-18 95.5 72 62.5
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 5.2e-18 95.5 69 65.2
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 1.2e-17 94.4 89 55.1
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 1.2e-17 94.4 89 55.1
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 1.2e-17 94.4 72 63.9
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.5e-17 94.0 72 63.9
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 1.5e-17 94.0 69 66.7
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.5e-17 94.0 69 65.2
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 4.4e-17 92.4 72 62.5
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 7.5e-17 91.7 133 42.9
C04p13140 Brassica napus HOM05D003542 ORTHO05D004799 3.5e-14 82.8 100 49.0
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 3.3e-12 76.3 139 30.9
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 4.0e-10 69.3 139 29.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.2e-07 59.7 132 26.5
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.5e-06 56.2 69 36.2


User provided reference genes

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