Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.0e-204 714.9 355 100.0
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.8e-196 689.1 363 96.1
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-169 599.7 339 90.9
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 4.1e-153 545.0 357 75.4
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.7e-151 539.7 357 75.1
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 5.1e-151 538.1 357 74.8
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 8.6e-151 537.3 356 73.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 2.5e-150 535.8 357 72.8
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 9.5e-150 533.9 357 73.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 2.8e-149 532.3 357 72.5
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 2.8e-149 532.3 357 72.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 4.7e-149 531.6 355 72.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 3.1e-148 528.9 358 72.9
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.2e-148 528.1 358 71.8
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 6.8e-148 527.7 358 72.3
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.8e-148 527.7 357 71.7
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 1.2e-147 526.9 358 73.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 1.2e-147 526.9 358 72.9
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 2.0e-147 526.2 357 73.1
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 2.0e-147 526.2 357 72.0
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 2.6e-147 525.8 358 71.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 3.4e-147 525.4 355 71.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 3.4e-147 525.4 357 71.1
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 3.4e-147 525.4 355 71.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 3.4e-147 525.4 355 71.5
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 4.4e-147 525.0 357 72.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.4e-147 525.0 357 71.7
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.4e-147 525.0 357 72.5
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 5.8e-147 524.6 357 71.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 7.6e-147 524.2 357 72.5
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 9.9e-147 523.9 358 72.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 9.9e-147 523.9 357 72.3
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 9.9e-147 523.9 357 72.8
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.7e-146 523.1 357 72.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 2.2e-146 522.7 358 72.3
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.2e-146 522.7 358 72.1
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 2.9e-146 522.3 358 70.1
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 2.9e-146 522.3 356 72.2
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 3.8e-146 521.9 357 72.5
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 3.8e-146 521.9 357 70.9
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 3.8e-146 521.9 357 71.1
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 3.8e-146 521.9 349 73.4
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 4.9e-146 521.5 357 72.0
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 4.9e-146 521.5 358 70.9
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 1.9e-145 519.6 357 72.5
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.4e-145 519.2 357 72.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 3.2e-145 518.8 358 70.9
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.2e-145 518.8 359 70.2
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.2e-145 518.5 358 71.2
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.2e-145 518.5 358 71.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 5.4e-145 518.1 357 72.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 9.2e-145 517.3 357 71.1
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 9.2e-145 517.3 357 71.4
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.2e-145 517.3 287 91.6
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 1.2e-144 516.9 357 71.7
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.2e-144 516.9 355 70.7
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 1.6e-144 516.5 357 70.6
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.1e-144 516.2 357 71.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.1e-144 516.2 357 71.4
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.1e-144 516.2 356 70.8
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 2.7e-144 515.8 358 70.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 3.5e-144 515.4 357 70.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 4.6e-144 515.0 357 69.5
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 6.0e-144 514.6 357 71.1
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 6.0e-144 514.6 357 70.3
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 6.0e-144 514.6 357 71.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 1.0e-143 513.8 357 70.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 1.3e-143 513.5 357 70.9
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 1.3e-143 513.5 357 71.1
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.7e-143 513.1 357 72.0
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 2.3e-143 512.7 357 69.7
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 2.3e-143 512.7 357 70.3
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 2.3e-143 512.7 357 70.6
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 2.3e-143 512.7 348 71.8
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 2.3e-143 512.7 357 71.4
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 2.3e-143 512.7 358 71.5
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 6.6e-143 511.1 357 70.0
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 8.7e-143 510.8 358 70.7
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 8.7e-143 510.8 357 70.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 1.1e-142 510.4 372 69.9
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 1.1e-142 510.4 357 70.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 1.5e-142 510.0 358 70.9
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.5e-142 510.0 357 70.3
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.9e-142 509.6 361 69.8
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-142 508.8 357 70.9
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 3.3e-142 508.8 357 70.3
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 9.6e-142 507.3 363 69.4
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 9.6e-142 507.3 357 70.6
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 9.6e-142 507.3 357 70.0
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 9.6e-142 507.3 357 70.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 9.6e-142 507.3 357 70.0
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 1.2e-141 506.9 357 70.3
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 1.6e-141 506.5 320 74.7
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 2.8e-141 505.8 357 69.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.8e-141 505.8 357 70.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 2.8e-141 505.8 357 70.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 3.6e-141 505.4 357 69.7
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 3.6e-141 505.4 358 70.4
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 4.7e-141 505.0 356 69.7
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 4.7e-141 505.0 357 69.7
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 4.7e-141 505.0 357 70.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 6.2e-141 504.6 357 70.3
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 8.1e-141 504.2 357 69.5
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 4.0e-140 501.9 357 69.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 9.0e-140 500.7 330 73.3
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 1.2e-139 500.4 327 73.7
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 1.2e-139 500.4 400 64.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 3.4e-139 498.8 357 69.2
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.8e-139 498.0 357 68.6
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.3e-138 496.9 396 63.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 6.4e-138 494.6 357 68.9
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 6.4e-138 494.6 351 70.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 7.1e-137 491.1 357 69.5
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 6.0e-136 488.0 354 67.2
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.4e-132 476.9 313 73.2
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 6.7e-127 458.0 285 76.5
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-126 456.1 317 69.4
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 2.8e-125 452.6 282 76.2
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.1e-124 450.7 360 61.1
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.1e-124 450.7 361 62.6
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 1.4e-124 450.3 357 65.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 9.3e-121 437.6 356 60.1
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.6e-120 436.8 352 62.2
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 2.7e-120 436.0 355 60.6
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 3.0e-119 432.6 357 61.6
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.3e-118 429.1 359 61.0
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 9.6e-118 427.6 356 62.1
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 1.4e-116 423.7 313 66.8
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.6e-112 408.7 208 99.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 4.6e-112 408.7 327 63.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 8.7e-111 404.4 321 63.6
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 3.4e-107 392.5 239 78.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.9e-105 386.7 314 58.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 4.2e-105 385.6 310 59.4
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 9.4e-105 384.4 239 77.4
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 4.6e-104 382.1 239 75.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 9.4e-97 357.8 315 56.5
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.0e-95 354.4 239 69.9
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 4.1e-92 342.4 299 57.5
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.5e-91 340.5 208 78.4
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 6.1e-88 328.6 357 50.7
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 5.0e-82 308.9 213 72.3
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 4.7e-80 302.4 333 47.4
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.6e-64 249.6 260 53.8
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.4e-62 242.7 216 55.6
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-57 226.9 223 54.3
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 7.0e-52 208.8 174 60.3
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.1e-47 193.4 125 74.4
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 6.0e-35 152.5 252 39.3
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 6.6e-34 149.1 180 46.1
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-33 148.3 208 44.2
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 2.4e-28 130.6 63 95.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 4.0e-23 113.2 149 47.7
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 2.4e-20 104.0 57 78.9
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 9.3e-20 102.1 161 41.0
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.3e-18 98.2 84 58.3
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.3e-18 97.4 165 36.4
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.1e-18 96.3 165 35.8
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 9.6e-17 92.0 108 45.4
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 9.0e-15 85.5 126 38.9
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.1e-12 78.6 45 82.2
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 3.5e-11 73.6 51 68.6
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 6.9e-07 59.3 40 60.0
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.6e-06 57.4 39 66.7
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 5.8e-06 56.2 76 46.1
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 7.6e-06 55.8 75 46.7


User provided reference genes

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