Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 2.0e-138 495.7 242 100.0
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 3.0e-94 349.0 238 72.7
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 5.1e-94 348.2 239 74.5
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.8e-92 342.4 237 70.5
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.2e-91 338.2 226 73.5
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.4e-90 335.5 240 68.8
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 2.9e-89 332.4 239 68.6
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 4.9e-89 331.6 233 69.5
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 4.9e-89 331.6 217 73.7
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.4e-88 329.3 240 69.6
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 7.1e-88 327.8 230 70.4
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 1.2e-87 327.0 227 69.6
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.6e-87 326.6 232 69.4
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.7e-87 325.9 224 71.0
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 1.3e-86 323.6 234 67.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.7e-86 323.2 236 67.8
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 2.3e-86 322.8 246 66.7
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 6.6e-86 321.2 224 68.3
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 6.6e-86 321.2 223 67.7
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.5e-85 320.1 242 65.7
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-85 319.7 224 67.9
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 3.3e-85 318.9 221 69.7
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 3.3e-85 318.9 239 66.1
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 4.3e-85 318.5 224 69.2
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 5.6e-85 318.2 223 68.2
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.3e-84 317.0 223 69.1
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.3e-84 317.0 239 65.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.1e-84 316.2 233 69.5
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.1e-84 316.2 226 69.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 2.8e-84 315.8 242 64.9
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 4.8e-84 315.1 241 66.8
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 4.8e-84 315.1 228 66.7
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 4.8e-84 315.1 234 69.7
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 6.2e-84 314.7 227 67.0
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 6.2e-84 314.7 233 68.2
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.1e-83 313.9 225 68.0
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 1.8e-83 313.2 219 69.9
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 1.5e-82 310.1 233 67.4
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 1.5e-82 310.1 226 68.1
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.6e-82 309.3 223 68.2
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 3.4e-82 308.9 244 63.9
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 4.4e-82 308.5 243 64.6
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 5.8e-82 308.1 223 66.8
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 9.9e-82 307.4 221 69.7
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.2e-81 306.2 213 70.0
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 3.8e-81 305.4 221 67.0
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 4.9e-81 305.1 228 64.0
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 8.4e-81 304.3 234 62.8
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 3.2e-80 302.4 248 62.5
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 7.1e-80 301.2 217 67.7
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 2.1e-79 299.7 223 66.4
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 2.1e-79 299.7 243 63.4
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 2.7e-79 299.3 224 64.3
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 2.7e-79 299.3 232 65.5
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 7.9e-79 297.7 232 62.9
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 7.9e-79 297.7 224 65.2
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 7.9e-79 297.7 224 65.2
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.7e-78 296.6 222 65.3
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 2.3e-78 296.2 218 69.7
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 3.9e-78 295.4 222 65.3
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.1e-77 293.9 233 61.8
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.3e-77 292.4 233 61.4
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.3e-77 292.0 233 61.8
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.6e-77 291.6 233 61.4
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 7.3e-77 291.2 233 63.1
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 1.3e-76 290.4 218 67.9
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 2.1e-76 289.7 225 64.0
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.8e-76 289.3 243 60.9
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 4.8e-76 288.5 236 62.3
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 1.1e-75 287.3 242 61.2
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.4e-75 286.2 224 64.3
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 4.0e-75 285.4 226 64.6
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 5.3e-75 285.0 225 64.9
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.5e-74 283.5 224 65.6
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 2.6e-74 282.7 224 63.4
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 3.4e-74 282.3 222 64.9
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 4.5e-74 282.0 224 62.9
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.5e-74 282.0 247 57.9
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 5.8e-74 281.6 224 62.9
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 5.8e-74 281.6 228 65.8
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.3e-73 280.4 224 62.9
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 6.4e-73 278.1 215 64.7
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 9.3e-72 274.2 222 62.2
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.2e-71 273.9 225 62.2
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.2e-71 273.9 225 62.2
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 4.6e-71 271.9 230 59.6
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.3e-70 270.4 228 61.8
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.3e-70 269.6 225 62.7
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 7.4e-69 264.6 233 56.2
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 9.0e-67 257.7 250 52.8
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 4.5e-66 255.4 249 55.4
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 2.5e-64 249.6 213 62.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.6e-63 245.4 232 55.6
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.8e-60 235.3 235 51.9
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.4e-59 233.8 231 49.4
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 2.4e-59 233.0 195 61.0
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 1.3e-54 217.2 129 73.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 1.8e-54 216.9 132 75.8
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 4.3e-53 212.2 184 59.8
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.1e-51 206.1 124 75.0
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 3.1e-51 206.1 124 75.0
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 3.1e-51 206.1 197 56.3
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.3e-49 200.7 182 56.6
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.3e-49 200.7 155 64.5
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.0e-49 198.7 154 64.3
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.2e-47 194.1 148 66.2
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 3.0e-46 189.5 148 66.9
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 7.7e-42 174.9 153 56.9
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 2.9e-41 172.9 252 37.7
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 1.4e-40 170.6 104 75.0
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 7.2e-40 168.3 109 70.6
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 4.4e-37 159.1 135 54.8
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.4e-35 154.1 141 56.0
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.2e-33 146.7 150 52.0
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 3.0e-30 136.3 115 56.5
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 9.1e-27 124.8 72 75.0
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.6e-26 124.0 133 51.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.5e-26 122.9 76 73.7
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.7e-25 120.6 79 68.4
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.2e-25 120.2 79 72.2
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-25 119.8 78 71.8
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-25 119.4 79 70.9
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.8e-25 119.4 79 70.9
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.5e-25 118.2 78 71.8
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.5e-25 118.2 78 71.8
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 7.2e-24 115.2 109 57.8
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 9.4e-24 114.8 103 62.1
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.6e-23 114.0 66 74.2
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 2.1e-23 113.6 126 51.6
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 5.7e-21 105.5 102 56.9
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 4.5e-18 95.9 58 67.2
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.3e-17 94.4 64 68.8
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 4.2e-16 89.4 99 52.5
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 9.4e-16 88.2 83 53.0
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.2e-15 87.8 55 69.1
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.7e-15 86.7 75 58.7
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.0e-14 83.2 85 54.1
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 5.7e-13 79.0 146 34.2
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 9.8e-13 78.2 49 71.4
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.7e-12 76.3 51 64.7
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 8.3e-12 75.1 168 29.8
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-11 72.8 189 27.5
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 5.4e-11 72.4 164 27.4
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 1.6e-10 70.9 175 30.9
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 3.5e-10 69.7 164 25.0
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 4.5e-10 69.3 80 42.5
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 7.7e-10 68.6 192 25.5
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.0e-09 65.9 168 24.4
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 2.5e-08 63.5 134 29.9
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 7.3e-08 62.0 34 70.6
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.1e-07 60.5 205 22.0
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 6.8e-06 55.5 35 65.7


User provided reference genes

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