Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g36700_MAGBIO Magnolia biondii HOM05D048846 ORTHO05D243468 9.6e-53 209.9 108 100.0
MBI05_g34368_MAGBIO Magnolia biondii HOM05D048846 ORTHO05D243768 2.1e-23 112.5 57 96.5
Lalb_Chr13g0303211 Lupinus albus HOM05D000878 ORTHO05D004971 1.4e-11 73.2 69 66.7
BraA06t25096Z Brassica rapa HOM05D000878 ORTHO05D004971 2.4e-11 72.4 69 66.7
BcaB01g00909 Brassica carinata HOM05D000878 ORTHO05D004971 5.3e-11 71.2 69 65.2
A06p20100 Brassica napus HOM05D000878 ORTHO05D004971 5.3e-11 71.2 69 65.2
Lalb_Chr07g0178081 Lupinus albus HOM05D000878 ORTHO05D004971 7.0e-11 70.9 69 65.2
Aa31LG4G16310 Aethionema arabicum HOM05D000878 ORTHO05D004971 9.1e-11 70.5 69 65.2
MSTRG.11382 Avicennia marina HOM05D000878 ORTHO05D004971 9.1e-11 70.5 69 63.8
MSTRG.23019 Avicennia marina HOM05D000878 ORTHO05D004971 9.1e-11 70.5 69 63.8
Gorai.003G097400 Gossypium raimondii HOM05D000878 ORTHO05D004971 9.1e-11 70.5 69 63.8
MBI05_g34365_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 9.1e-11 70.5 69 65.2
BcaC01g01807 Brassica carinata HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
C03p71710 Brassica napus HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
BolC3t19462H Brassica oleracea HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
Gohir.A11G031601 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
Gohir.D11G035100 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
Gorai.007G037800 Gossypium raimondii HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
Lj5P110T53 Lonicera japonica HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 63.8
PGR044G0764 Punica granatum HOM05D000878 ORTHO05D004971 1.2e-10 70.1 69 65.2
Cpa.g.sc423.5 Carica papaya HOM05D000878 ORTHO05D004971 1.6e-10 69.7 69 63.8
Duzib205G0369 Durio zibethinus HOM05D000878 ORTHO05D004971 1.6e-10 69.7 69 63.8
Eucgr.B00511 Eucalyptus grandis HOM05D000878 ORTHO05D004971 1.6e-10 69.7 69 63.8
Gohir.A03G067000 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.6e-10 69.7 69 63.8
Carub.0005s1361 Capsella rubella HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
COL.COLO4_04683 Corchorus olitorius HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
DCAR_026053 Daucus carota HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
Duzib084G0665 Durio zibethinus HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
Eucgr.K02475 Eucalyptus grandis HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
Manes.06G091900 Manihot esculenta HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
TAR374G1511 Trochodendron aralioides HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
TAR622G1224 Trochodendron aralioides HOM05D000878 ORTHO05D004971 2.0e-10 69.3 69 63.8
DCAR_016565 Daucus carota HOM05D000878 ORTHO05D004971 2.6e-10 68.9 69 62.3
Peaxi162Scf00073g00197 Petunia axillaris HOM05D000878 ORTHO05D306908 2.6e-10 68.9 69 62.3
Rhsim05G0214500 Rhododendron simsii HOM05D000878 ORTHO05D004971 2.6e-10 68.9 69 62.3
THA.LOC104821420 Tarenaya hassleriana HOM05D000878 ORTHO05D004971 2.6e-10 68.9 69 63.8
Ah.09g232690 Amaranthus hybridus HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
CiPaw.11G045000 Carya illinoinensis HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
AUR62027526 Chenopodium quinoa HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
AUR62030224 Chenopodium quinoa HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
ClCG02G005430 Citrullus lanatus HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
MELO3C016050.2 Cucumis melo HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
Thhalv10010432m.g Eutrema salsugineum HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
Hma1.2p1_1936F.1_g308200 Hydrangea macrophylla HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
Hma1.2p1_2516F.1_g323680 Hydrangea macrophylla HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
MBI13_g04783_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
Prupe.5G194200 Prunus persica HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 63.8
PGR083G0597 Punica granatum HOM05D000878 ORTHO05D004971 3.5e-10 68.6 69 62.3
AL5G26750 Arabidopsis lyrata HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
AT3G47520 Arabidopsis thaliana HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
arahy.Tifrunner.gnm1.ann1.JDV80H Arachis hypogaea HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
EL10Ac8g19741 Beta vulgaris HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
CARHR156160 Cardamine hirsuta HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Cc04_g16570 Coffea canephora HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Glyma.05G026300 Glycine max HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Gohir.D03G093400 Gossypium hirsutum HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
HanXRQChr09g0270821 Helianthus annuus HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Lj4g0005214 Lotus japonicus HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Manes.14G078500 Manihot esculenta HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Potri.004G112800 Populus trichocarpa HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Potri.017G102000 Populus trichocarpa HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Sabra04G0072100 Salix brachista HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
Sabra17G0087900 Salix brachista HOM05D000878 ORTHO05D004971 4.5e-10 68.2 69 62.3
SMO259G0017 Selaginella moellendorffii HOM05D000878 ORTHO05D004971 4.5e-10 68.2 73 60.3
ATR0564G247 Amborella trichopoda HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
Aqoxy3G03394 Aquilegia oxysepala HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
Ca_21819_v3 Cicer arietinum L. HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 60.9
MELO3C017175.2 Cucumis melo HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 60.9
CsaV3_7G028870 Cucumis sativus L. HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
Duzib068G0095 Durio zibethinus HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
MBI13_g04784_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
PSO013G0085 Papaver somniferum HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
Phvul.003G189700 Phaseolus vulgaris HOM05D000878 ORTHO05D004971 5.9e-10 67.8 69 62.3
VMungo1215G0211 Vigna mungo HOM05D003022 ORTHO05D003363 5.9e-10 67.8 69 62.3
Dinv38716 Davidia involucrata HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 62.3
Nn4g25036 Nelumbo nucifera HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 62.3
Sed0023806 Sechium edule HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 60.9
Solyc09g091070.3 Solanum lycopersicum HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 60.9
TWI60G0622 Tripterygium wilfordii HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 62.3
unitig_578.g16261 Utricularia gibba HOM05D000878 ORTHO05D004971 7.7e-10 67.4 69 62.3
CANSAT78G0835 Cannabis sativa HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
CAN.G837.24 Capsicum annuum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
ECA247G1529 Erigeron canadensis HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Migut.D01813 Erythranthe guttata HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Gohir.A07G066200 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Gohir.D07G070700 Gossypium hirsutum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Gorai.001G074600 Gossypium raimondii HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
MD06G1193800 Malus domestica HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Nitab4.5_0001128g0090 Nicotiana tabacum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Nitab4.5_0009145g0010 Nicotiana tabacum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Peaxi162Scf00274g00052 Petunia axillaris HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Sabra17G0087700 Salix brachista HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Sp5g14360 Schrenkiella parvula HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
Sed0003482 Sechium edule HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Solyc03g115990.3 Solanum lycopersicum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Sopen03g034980 Solanum pennellii HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
PGSC0003DMG400019511 Solanum tuberosum HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 60.9
Thecc.03G089000 Theobroma cacao HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
TPR.G9254 Trifolium pratense HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
TWI15G0238 Tripterygium wilfordii HOM05D000878 ORTHO05D004971 1.0e-09 67.0 69 62.3
EL10Ac5g11025 Beta vulgaris HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 60.9
Cfa018937 Carpinus fangiana HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 60.9
Haze_07321 Corylus avellana HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 60.9
Os08g0434300 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 62.3
PSO832G3464 Papaver somniferum HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 62.3
QL10p017096 Quercus lobata HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 60.9
Zm00001eb041400 Zea mays HOM05D000878 ORTHO05D004971 1.3e-09 66.6 69 62.3
Actinidia04891 Actinidia chinensis HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 60.9
CSS0050326 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 60.9
HanXRQChr02g0043601 Helianthus annuus HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 62.3
Potri.017G101900 Populus trichocarpa HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 60.9
SEGI_11860 Sequoiadendron giganteum HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 60.9
Sopen09g034050 Solanum pennellii HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 59.4
Zm00001eb179730 Zea mays HOM05D000878 ORTHO05D004971 1.7e-09 66.2 69 62.3
Ciclev10020378m.g Citrus clementina HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
FvH4_5g14890 Fragaria vesca HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
FAN04G0395 Fragaria x ananassa HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
FAN08G3464 Fragaria x ananassa HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
FAN13G3029 Fragaria x ananassa HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
FAN18G3262 Fragaria x ananassa HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
Mapoly0068s0019 Marchantia polymorpha HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 60.9
Pp3c14_9020 Physcomitrium patens HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 60.9
RcHm_v2.0_Chr7g0181501 Rosa chinensis HOM05D000878 ORTHO05D004971 2.2e-09 65.9 69 62.3
arahy.Tifrunner.gnm1.ann1.76IQRR Arachis hypogaea HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 60.9
CAN.G812.41 Capsicum annuum HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 58.0
Dinv33765 Davidia involucrata HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 62.3
Glyma.17G100600 Glycine max HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 59.4
Lsat_1_v5_gn_4_108821 Lactuca sativa HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 60.9
Nitab4.5_0000451g0100 Nicotiana tabacum HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 59.4
Oeu022208.1 Olea europaea HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 60.9
Sc11g0007110 Simmondsia chinensis HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 59.4
HPP92_011250 Vanilla planifolia HOM05D000878 ORTHO05D004971 2.9e-09 65.5 69 60.9
CsaV3_1G002350 Cucumis sativus L. HOM05D000878 ORTHO05D004971 3.8e-09 65.1 69 59.4
Nitab4.5_0006000g0090 Nicotiana tabacum HOM05D000878 ORTHO05D004971 3.8e-09 65.1 69 58.0
Oeu047010.2 Olea europaea HOM05D000878 ORTHO05D004971 3.8e-09 65.1 69 59.4
Hund02647 Selenicereus undatus HOM05D000878 ORTHO05D004971 3.8e-09 65.1 69 59.4
Actinidia35000 Actinidia chinensis HOM05D000878 ORTHO05D004971 5.0e-09 64.7 69 60.9
Pp3c17_6520 Physcomitrium patens HOM05D000878 ORTHO05D004971 5.0e-09 64.7 69 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1776 Anthoceros agrestis HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 60.9
CDE08G1275 Ceratophyllum demersum HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 59.4
AUR62008422 Chenopodium quinoa HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 58.0
Lsat_1_v5_gn_9_45660 Lactuca sativa HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 60.9
Os01g0829800 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 60.9
SalBow7G2087 Salvia bowleyana HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 59.4
PGSC0003DMG400011570 Solanum tuberosum HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 59.4
PGSC0003DMG402025430 Solanum tuberosum HOM05D000878 ORTHO05D004971 6.5e-09 64.3 69 59.4
ATR0626G197 Amborella trichopoda HOM05D000878 ORTHO05D004971 8.5e-09 63.9 69 59.4
MSTRG.9628 Avicennia marina HOM05D000878 ORTHO05D004971 1.1e-08 63.5 69 58.0
PRCOL_00004249 Prasinoderma coloniale HOM05D000878 ORTHO05D001408 1.5e-08 63.2 67 62.7
SEGI_28749 Sequoiadendron giganteum HOM05D000878 ORTHO05D004971 1.5e-08 63.2 67 62.7
HPP92_016792 Vanilla planifolia HOM05D000878 ORTHO05D004971 1.5e-08 63.2 69 59.4
Migut.I00183 Erythranthe guttata HOM05D000878 ORTHO05D004971 1.9e-08 62.8 69 58.0
unitig_60.g25420 Utricularia gibba HOM05D000878 ORTHO05D004971 1.9e-08 62.8 69 58.0
CSS0040062 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 2.5e-08 62.4 69 58.0
ECA232G2061 Erigeron canadensis HOM05D000878 ORTHO05D004971 3.2e-08 62.0 69 58.0
SGA_v2.0_scaffold25G10915 Striga asiatica HOM05D000878 ORTHO05D004971 3.2e-08 62.0 69 59.4
Ah.02g113570 Amaranthus hybridus HOM05D000878 ORTHO05D004971 5.5e-08 61.2 69 56.5
CSS0040190 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D004971 5.5e-08 61.2 69 58.0
HPP92_016832 Vanilla planifolia HOM05D000878 ORTHO05D004971 5.5e-08 61.2 69 58.0
SGA_v2.0_scaffold201G41399 Striga asiatica HOM05D000878 ORTHO05D004971 7.2e-08 60.8 69 58.0
MCO09G285 Micromonas commoda HOM05D000878 ORTHO05D001408 1.2e-07 60.1 67 61.2
AUR62021673 Chenopodium quinoa HOM05D000878 ORTHO05D004971 1.6e-07 59.7 69 56.5
Psat4g051000 Pisum sativum HOM05D000878 ORTHO05D004971 6.1e-07 57.8 85 50.6
CBR_g11149 Chara braunii HOM05D000878 ORTHO05D004971 1.0e-06 57.0 69 56.5
CDE04G1733 Ceratophyllum demersum HOM05D000878 ORTHO05D000404 1.8e-06 56.2 61 59.0
PRCOL_00002817 Prasinoderma coloniale HOM05D000878 ORTHO05D001408 1.8e-06 56.2 67 55.2
SEGI_19605 Sequoiadendron giganteum HOM05D000878 ORTHO05D001408 3.0e-06 55.5 68 54.4
Pp3c11_3740 Physcomitrium patens HOM05D000878 ORTHO05D001408 4.0e-06 55.1 67 55.2
Mapoly0015s0129 Marchantia polymorpha HOM05D000878 ORTHO05D001408 5.2e-06 54.7 68 52.9
Lj2g0027385 Lotus japonicus HOM05D000878 ORTHO05D001408 6.7e-06 54.3 68 54.4
MCO14G243 Micromonas commoda HOM05D000878 ORTHO05D001408 6.7e-06 54.3 71 53.5


User provided reference genes

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