Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-252 875.5 445 100.0
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.2e-183 646.0 542 67.9
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 5.9e-181 637.9 490 68.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 8.5e-180 634.0 568 61.4
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 8.5e-172 607.4 540 60.4
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.5e-171 605.9 519 62.0
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 2.5e-171 605.9 514 61.9
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.2e-171 605.5 535 61.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 7.2e-171 604.4 563 60.0
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 9.4e-171 604.0 552 59.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.2e-170 603.6 534 62.7
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.6e-170 603.2 542 60.1
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.1e-170 602.8 535 60.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 3.6e-170 602.1 518 62.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 8.0e-170 600.9 533 59.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.3e-169 599.4 584 57.5
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.0e-169 598.6 557 58.7
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.0e-169 598.6 557 58.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.2e-169 598.2 527 60.3
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 6.7e-169 597.8 568 57.9
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.2e-168 597.0 564 58.5
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.0e-168 596.3 523 61.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.6e-168 595.9 553 59.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.6e-168 595.9 577 58.2
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 4.4e-168 595.1 570 58.2
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 5.7e-168 594.7 560 57.9
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 7.5e-168 594.3 546 59.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 7.5e-168 594.3 535 60.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.3e-167 593.6 527 61.7
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-167 593.2 540 59.3
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.7e-167 593.2 561 59.0
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.8e-167 592.4 559 57.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.3e-167 591.3 528 59.8
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.8e-166 589.7 527 60.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.8e-166 589.7 527 60.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.4e-166 589.3 543 59.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.4e-166 589.3 540 58.7
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.1e-166 589.0 537 60.1
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.1e-166 589.0 560 58.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.1e-166 589.0 536 59.5
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 4.1e-166 588.6 531 60.5
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.1e-166 588.6 562 57.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 4.1e-166 588.6 530 60.9
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 9.1e-166 587.4 540 58.7
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.6e-165 586.6 567 57.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-165 586.6 566 57.6
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.6e-165 586.6 577 56.8
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.0e-165 586.3 565 57.9
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 2.0e-165 586.3 543 59.1
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.7e-165 585.9 520 60.2
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 4.5e-165 585.1 559 57.4
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 7.7e-165 584.3 523 60.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.2e-164 582.8 528 59.8
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.0e-164 581.6 537 58.8
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 6.5e-164 581.3 550 58.2
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.5e-164 580.9 522 60.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.1e-163 580.5 540 58.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.1e-163 580.5 543 57.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.5e-163 580.1 532 60.2
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.9e-163 579.7 558 59.3
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 1.9e-163 579.7 556 57.2
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.9e-163 579.7 532 60.2
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 9.4e-163 577.4 525 59.2
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.6e-162 576.6 560 57.0
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-162 576.6 539 58.6
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.1e-162 576.2 531 59.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.7e-162 575.9 545 57.4
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.7e-162 575.9 545 57.4
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.7e-162 575.9 545 57.4
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.6e-162 575.5 532 58.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.6e-162 575.5 532 58.1
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 6.1e-162 574.7 513 59.8
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 8.0e-162 574.3 516 60.7
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-161 573.9 532 58.3
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.0e-161 573.9 532 58.3
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.8e-161 573.2 548 56.2
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.8e-161 573.2 551 57.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.0e-161 572.4 529 57.8
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.2e-161 571.6 521 59.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 8.8e-161 570.9 541 58.0
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.2e-160 570.5 505 60.0
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-160 570.5 557 58.5
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.2e-160 570.5 562 56.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.0e-160 569.7 526 58.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 2.6e-160 569.3 528 59.3
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.6e-160 569.3 540 57.0
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 4.4e-160 568.5 529 57.3
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 7.5e-160 567.8 529 60.3
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 9.8e-160 567.4 534 57.9
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-159 567.0 558 56.8
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 3.7e-159 565.5 558 56.3
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 6.3e-159 564.7 535 56.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 2.4e-158 562.8 517 58.4
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 3.5e-157 558.9 553 55.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 8.6e-156 554.3 512 58.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.6e-156 554.3 522 58.4
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 9.5e-155 550.8 551 56.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.5e-155 550.8 527 57.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 4.7e-154 548.5 519 57.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 6.1e-154 548.1 524 56.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 1.8e-153 546.6 472 64.0
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.3e-151 540.4 521 58.2
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.3e-151 540.4 543 55.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 6.6e-148 528.1 496 56.9
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 9.5e-147 524.2 500 55.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.4e-144 515.4 540 53.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 5.4e-142 508.4 470 58.9
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.0e-142 508.1 506 53.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.7e-140 503.4 493 54.4
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 7.3e-139 498.0 461 57.5
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.6e-133 480.3 500 53.8
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 7.5e-128 461.5 541 49.2
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 9.9e-128 461.1 468 58.8
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.2e-126 456.1 468 54.5
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 3.4e-120 436.0 493 48.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 5.8e-120 435.3 493 50.5
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 8.4e-119 431.4 405 60.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.4e-118 429.9 490 49.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 8.7e-116 421.4 445 53.0
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 7.3e-115 418.3 499 45.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 7.3e-115 418.3 494 51.0
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.8e-114 416.4 420 53.1
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 3.8e-111 406.0 447 49.4
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.7e-108 397.1 509 47.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 5.6e-99 365.5 505 44.2
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.3e-92 344.4 484 44.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-92 344.4 484 44.0
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-92 344.4 435 46.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.0e-92 343.2 483 44.1
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 7.1e-86 322.0 287 65.2
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.1e-83 314.7 402 44.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.1e-83 314.7 191 84.8
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 6.7e-76 288.9 318 52.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.5e-75 287.7 184 72.8
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-72 278.1 479 38.4
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.8e-71 273.1 412 43.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-69 266.5 391 43.2
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.4e-68 264.6 158 84.2
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.3e-66 255.8 500 33.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 3.3e-59 233.4 331 42.0
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.1e-53 212.6 352 39.8
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.3e-50 202.2 238 51.3
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.1e-49 201.8 138 73.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.7e-45 187.2 531 27.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-42 178.3 272 40.4
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.6e-37 160.2 113 74.3
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.3e-36 157.5 289 38.4
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 6.3e-34 149.4 445 26.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.4e-33 148.3 120 61.7
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 3.6e-29 133.7 80 73.8
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.8e-28 129.4 95 76.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 7.5e-27 125.9 77 83.1
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 9.8e-27 125.6 138 53.6
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.1e-22 112.1 66 86.4
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 6.2e-21 106.3 76 68.4
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.8e-20 104.8 71 70.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.4e-17 95.1 71 69.0
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 3.5e-16 90.5 54 83.3
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 5.1e-15 86.7 78 43.6
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 3.3e-14 84.0 50 80.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-12 78.2 64 62.5
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 4.0e-12 77.0 98 51.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.4e-11 73.9 69 53.6
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.7e-10 71.6 52 65.4
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 4.1e-09 67.0 42 71.4
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.0e-07 62.4 44 65.9


User provided reference genes

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