Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 2.0e-136 489.2 262 100.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 3.2e-126 455.3 262 91.6
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 3.5e-125 451.8 262 91.2
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 91.2
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 90.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 90.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.6e-125 451.4 262 90.8
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 7.8e-125 450.7 262 90.5
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.3e-124 449.9 262 90.8
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 90.5
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.7e-124 449.5 262 90.8
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.3e-124 449.1 262 90.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.9e-124 448.4 262 89.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.9e-124 448.4 262 89.7
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 5.1e-124 448.0 262 90.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 89.7
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.1e-123 446.8 262 89.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.5e-123 445.7 262 90.1
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 3.3e-123 445.3 262 88.5
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.6e-123 444.5 262 88.5
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 89.3
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.8e-122 441.4 262 90.1
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 6.2e-122 441.0 262 87.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 88.5
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 87.4
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-121 440.3 262 87.8
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.4e-121 439.9 261 87.4
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.8e-121 439.5 262 87.4
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.8e-121 439.5 262 88.2
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 2.4e-121 439.1 262 87.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 3.1e-121 438.7 262 88.5
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 87.8
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 87.8
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 4.0e-121 438.3 262 86.6
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 88.2
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 87.8
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.2
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 86.3
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 87.0
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 88.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.2e-120 436.8 262 85.5
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.9
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 88.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.4
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 88.5
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 88.5
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 2.6e-120 435.6 262 87.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 88.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 86.3
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 86.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 88.5
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 9.9e-120 433.7 263 87.5
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.4
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 86.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.9e-119 432.2 263 87.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 85.1
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.1
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 87.4
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 8.4e-119 430.6 263 86.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.3
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.5
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 4.2e-118 428.3 259 87.6
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.0
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.7
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 83.6
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 83.2
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.5e-117 425.2 263 85.6
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.0
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 83.6
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 85.1
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.9
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 85.1
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.6
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 83.6
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.9e-115 419.5 253 85.4
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 84.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 9.6e-115 417.2 264 83.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 8.1e-114 414.1 247 88.7
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.4e-113 413.3 263 82.9
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 1.8e-113 412.9 247 88.3
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.1e-113 412.1 263 83.3
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 83.2
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.0e-113 411.8 264 82.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 6.9e-113 411.0 264 82.6
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 83.2
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 82.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.9e-112 407.1 262 83.6
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.9e-111 405.6 239 88.3
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.9e-111 405.6 262 81.3
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 81.3
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 81.3
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 81.3
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.4e-110 403.3 262 81.3
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 2.5e-110 402.5 262 81.3
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.5e-110 402.5 263 82.9
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 3.2e-110 402.1 246 87.0
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.9
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.9
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.9
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.9
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 81.3
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.2e-110 401.7 262 80.9
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 80.9
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 7.1e-110 401.0 262 80.9
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 7.1e-110 401.0 263 82.5
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 79.8
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.2e-109 400.2 262 80.5
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 80.5
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 80.5
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 80.5
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 80.6
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 80.6
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.0e-108 397.1 263 80.6
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 7.4e-107 391.0 248 83.1
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 263 80.2
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.3e-106 390.2 270 77.4
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 81.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 80.2
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.4e-104 382.1 270 75.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 7.6e-104 380.9 262 79.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 8.4e-103 377.5 262 77.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 9.3e-102 374.0 264 77.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.1e-101 372.9 263 78.3
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.9e-100 368.6 249 77.9
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-97 360.5 218 88.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.2e-96 357.1 241 80.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.3e-95 353.6 210 88.6
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.5e-95 350.9 234 79.5
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.4e-94 350.1 263 70.3
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 5.5e-94 348.2 226 79.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.1e-91 340.5 262 71.0
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.5e-91 340.1 214 84.6
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.3e-90 337.0 263 68.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 2.2e-90 336.3 219 77.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 4.5e-88 328.6 219 78.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.4e-83 311.2 250 70.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.5e-80 303.5 267 62.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.3e-79 300.4 247 69.6
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.2e-79 299.7 204 77.9
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.0e-79 298.5 218 69.7
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.0e-79 298.5 236 64.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.5e-75 287.0 250 64.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 8.2e-74 281.2 263 62.7
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 8.2e-74 281.2 208 70.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-70 270.4 262 62.6
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.4e-67 258.8 270 55.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.3e-65 251.9 211 63.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.5e-64 248.8 235 64.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 5.4e-57 225.3 244 53.3
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.8e-55 219.2 130 85.4
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.0e-52 211.1 244 49.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-52 210.7 138 82.6
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.5e-51 204.9 120 89.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.0e-47 194.5 118 86.4
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 7.3e-46 188.3 179 61.5
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.5e-38 163.3 191 51.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 2.0e-35 153.7 127 67.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.1e-30 137.9 96 71.9
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 8.3e-26 121.7 69 92.8


User provided reference genes

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