Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 8.8e-120 433.7 233 100.0
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.9e-77 293.1 230 69.1
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.2e-76 290.4 237 68.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 3.0e-75 285.8 237 67.5
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.0e-75 285.8 233 70.0
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.5e-74 282.7 231 68.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.3e-74 282.3 237 65.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 5.6e-74 281.6 232 68.5
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.6e-74 281.6 194 77.3
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 7.3e-74 281.2 231 68.8
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-73 280.4 237 63.7
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-73 280.4 237 65.8
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-73 280.4 232 68.5
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-73 280.4 237 63.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.2e-73 280.4 237 65.8
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.6e-73 280.0 233 67.4
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 2.1e-73 279.6 234 66.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.1e-73 279.6 232 67.2
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.8e-73 279.3 233 63.1
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 2.8e-73 279.3 192 76.0
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.8e-73 279.3 230 67.4
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.8e-73 279.3 237 65.0
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 2.8e-73 279.3 237 65.4
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 3.6e-73 278.9 232 68.5
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 3.6e-73 278.9 231 66.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.6e-73 278.9 230 63.5
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 4.7e-73 278.5 228 68.9
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.8e-72 276.6 235 68.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 3.1e-72 275.8 229 62.4
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 4.0e-72 275.4 196 73.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 8.9e-72 274.2 194 70.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 8.9e-72 274.2 222 63.1
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.2e-71 273.9 215 64.7
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.2e-71 273.9 232 60.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.2e-71 273.9 190 71.1
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.5e-71 273.5 184 77.7
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.5e-71 273.5 230 66.1
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.0e-71 273.1 181 80.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.0e-71 273.1 222 63.5
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 2.0e-71 273.1 239 66.9
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.0e-71 273.1 235 62.6
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 3.4e-71 272.3 231 68.8
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.4e-71 271.9 190 71.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 5.8e-71 271.6 233 60.1
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 5.8e-71 271.6 233 60.5
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.6e-71 271.2 229 60.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 7.6e-71 271.2 183 76.0
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 7.6e-71 271.2 181 77.9
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 7.6e-71 271.2 232 69.0
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 7.6e-71 271.2 232 62.1
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 9.9e-71 270.8 232 61.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 9.9e-71 270.8 228 64.5
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.3e-70 270.4 233 66.1
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 2.2e-70 269.6 210 66.2
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.8e-70 268.9 233 61.4
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 3.8e-70 268.9 236 66.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 4.9e-70 268.5 202 66.8
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 8.4e-70 267.7 178 77.5
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 8.4e-70 267.7 229 64.2
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.4e-69 266.9 232 61.6
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.4e-69 266.9 181 72.4
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 1.4e-69 266.9 233 60.1
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.4e-69 266.2 232 63.8
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.4e-69 266.2 230 67.8
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 3.2e-69 265.8 233 59.7
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 3.2e-69 265.8 233 59.7
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 4.2e-69 265.4 229 65.9
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 4.2e-69 265.4 228 66.7
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 4.2e-69 265.4 211 65.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 7.1e-69 264.6 196 72.4
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 7.1e-69 264.6 220 60.0
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 9.3e-69 264.2 216 70.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.2e-68 263.8 220 60.5
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.7e-68 262.7 235 58.7
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 3.5e-68 262.3 187 72.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 3.5e-68 262.3 220 70.5
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 3.5e-68 262.3 227 64.8
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.5e-68 262.3 216 69.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 4.6e-68 261.9 232 65.1
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 6.0e-68 261.5 232 60.3
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 7.8e-68 261.2 232 59.5
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.0e-67 260.8 216 69.9
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.3e-67 259.6 194 73.7
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 3.0e-67 259.2 189 73.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 5.1e-67 258.5 191 65.4
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 6.6e-67 258.1 191 73.8
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.1e-66 257.3 198 66.7
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 1.5e-66 256.9 230 59.1
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.3e-66 255.8 212 61.3
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 4.3e-66 255.4 190 65.8
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 5.6e-66 255.0 213 68.5
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.3e-65 253.8 210 69.0
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 3.6e-65 252.3 196 61.7
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 1.4e-64 250.4 180 73.9
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.9e-64 248.1 223 58.3
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-63 247.3 223 58.3
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.2e-63 247.3 189 70.9
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.6e-63 246.1 214 57.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.6e-63 246.1 236 57.2
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.9e-62 242.7 176 73.3
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.8e-62 242.3 197 67.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 6.4e-62 241.5 166 69.9
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.6e-60 235.3 183 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 6.0e-60 235.0 224 58.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 3.7e-57 225.7 186 66.7
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.0e-51 206.1 139 69.1
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 5.6e-50 201.8 174 63.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 4.9e-46 188.7 135 65.2
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.1e-44 183.3 141 60.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 8.7e-43 177.9 141 58.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.5e-42 177.2 141 58.2
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.9e-42 176.8 141 58.2
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.9e-42 176.8 141 58.2
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 9.7e-42 174.5 141 57.4
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-42 174.5 141 57.4
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-42 174.5 141 57.4
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 9.7e-42 174.5 141 57.4
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 9.7e-42 174.5 189 53.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 9.7e-42 174.5 142 55.6
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.6e-41 173.7 141 57.4
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 2.8e-41 172.9 141 56.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 2.8e-41 172.9 141 56.7
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.8e-41 172.9 141 56.7
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.8e-41 172.9 141 57.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.1e-40 171.0 141 56.7
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.2e-39 167.5 142 54.2
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.2e-36 157.5 102 72.5
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 4.6e-36 155.6 191 48.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 6.1e-36 155.2 142 51.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.9e-35 152.5 107 75.7
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.3e-30 137.5 105 73.3
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.6e-28 130.6 152 45.4
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 2.1e-28 130.2 152 42.8
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.0e-27 127.9 165 41.8
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-27 126.7 131 60.3
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.3e-27 126.7 152 42.8
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.8e-25 119.0 205 44.4
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 8.2e-25 118.2 130 53.8
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.1e-21 107.8 127 46.5
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.7e-20 103.2 88 58.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 8.0e-20 101.7 105 56.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 2.3e-19 100.1 147 34.0
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.9e-19 99.4 65 72.3
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 8.8e-19 98.2 152 34.2
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 2.0e-18 97.1 71 59.2
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 1.7e-17 94.0 167 34.1
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 3.7e-17 92.8 235 39.6
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 5.0e-14 82.4 89 50.6
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.6e-12 77.4 101 39.6
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 8.8e-11 71.6 48 70.8
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.5e-06 55.5 81 34.6
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.5e-06 55.5 81 34.6


User provided reference genes

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