Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 1.2e-39 166.8 82 100.0
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 6.1e-28 127.9 65 93.8
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 5.2e-19 98.2 50 92.0
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 6.8e-11 71.2 56 58.9
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 8.8e-11 70.9 57 59.6
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 1.2e-10 70.5 38 73.7
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 2.0e-10 69.7 62 54.8
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 2.6e-10 69.3 38 76.3
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 5.7e-10 68.2 38 71.1
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 5.7e-10 68.2 54 57.4
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 7.5e-10 67.8 56 55.4
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 7.5e-10 67.8 38 71.1
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 9.8e-10 67.4 36 72.2
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 1.3e-09 67.0 61 52.5
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 1.7e-09 66.6 42 66.7
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 1.7e-09 66.6 56 58.9
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 2.2e-09 66.2 56 55.4
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 2.2e-09 66.2 56 55.4
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 2.8e-09 65.9 38 65.8
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 2.8e-09 65.9 38 65.8
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 2.8e-09 65.9 38 65.8
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 3.7e-09 65.5 38 68.4
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 4.8e-09 65.1 56 55.4
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 4.8e-09 65.1 37 70.3
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 6.3e-09 64.7 38 68.4
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 6.3e-09 64.7 38 65.8
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 6.3e-09 64.7 38 71.1
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 8.3e-09 64.3 45 57.8
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 1.1e-08 63.9 50 52.0
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 1.4e-08 63.5 62 50.0
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.4e-08 63.5 55 54.5
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 1.4e-08 63.5 56 53.6
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 1.4e-08 63.5 38 63.2
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 1.4e-08 63.5 40 65.0
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 1.4e-08 63.5 41 65.9
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 1.8e-08 63.2 57 52.6
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 1.8e-08 63.2 40 62.5
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 1.8e-08 63.2 34 76.5
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 1.8e-08 63.2 34 76.5
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 1.8e-08 63.2 71 50.7
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 2.4e-08 62.8 40 62.5
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 2.4e-08 62.8 62 51.6
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 2.4e-08 62.8 40 62.5
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 3.1e-08 62.4 62 50.0
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 3.1e-08 62.4 40 62.5
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 3.1e-08 62.4 56 51.8
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 4.1e-08 62.0 38 65.8
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 5.4e-08 61.6 32 78.1
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 5.4e-08 61.6 38 60.5
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 5.4e-08 61.6 59 52.5
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 7.0e-08 61.2 55 54.5
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 7.0e-08 61.2 55 52.7
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 7.0e-08 61.2 43 58.1
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 9.1e-08 60.8 40 62.5
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 9.1e-08 60.8 46 56.5
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 9.1e-08 60.8 40 60.0
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 1.2e-07 60.5 59 47.5
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.2e-07 60.5 38 60.5
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 1.2e-07 60.5 38 60.5
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 1.2e-07 60.5 37 62.2
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 1.2e-07 60.5 37 62.2
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 1.6e-07 60.1 41 65.9
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 1.6e-07 60.1 56 51.8
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 1.6e-07 60.1 40 60.0
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 1.6e-07 60.1 54 53.7
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.0e-07 59.7 39 64.1
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 2.0e-07 59.7 64 46.9
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 2.7e-07 59.3 33 72.7
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 2.7e-07 59.3 58 51.7
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 2.7e-07 59.3 59 49.2
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 2.7e-07 59.3 38 60.5
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 3.5e-07 58.9 37 59.5
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 3.5e-07 58.9 34 67.6
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 3.5e-07 58.9 55 54.5
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 3.5e-07 58.9 38 60.5
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 4.5e-07 58.5 41 65.9
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 4.5e-07 58.5 59 50.8
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 4.5e-07 58.5 57 50.9
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 7.7e-07 57.8 56 48.2
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 7.7e-07 57.8 38 60.5
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 7.7e-07 57.8 41 65.9
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.0e-06 57.4 44 56.8
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 1.3e-06 57.0 57 52.6
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 1.3e-06 57.0 34 76.5
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 1.7e-06 56.6 57 47.4
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 1.7e-06 56.6 57 47.4
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.3e-06 56.2 34 73.5
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.3e-06 56.2 38 60.5
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 2.9e-06 55.8 56 51.8
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 2.9e-06 55.8 56 51.8
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.9e-06 55.8 40 60.0
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 3.8e-06 55.5 56 46.4
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 5.0e-06 55.1 57 50.9
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 5.0e-06 55.1 54 50.0
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 5.0e-06 55.1 40 60.0
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 5.0e-06 55.1 40 60.0
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 6.6e-06 54.7 56 46.4
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 8.6e-06 54.3 34 73.5


User provided reference genes

Program Settings