Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 4.0e-237 824.3 399 100.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 3.2e-154 548.9 397 67.8
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.5e-154 548.1 394 68.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.2e-154 547.7 394 68.8
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.6e-153 545.4 386 68.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 4.7e-153 545.0 395 68.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.0e-152 542.3 394 68.3
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 8.8e-152 540.8 377 68.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.1e-151 540.4 368 69.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.5e-151 540.0 389 66.6
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.3e-151 538.9 385 68.3
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 4.4e-151 538.5 389 66.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 4.4e-151 538.5 368 68.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.7e-151 538.1 397 67.8
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.7e-151 538.1 347 75.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 7.4e-151 537.7 380 67.4
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 9.7e-151 537.3 369 69.1
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 1.3e-150 537.0 383 68.1
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.7e-150 536.6 361 70.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 4.8e-150 535.0 389 65.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 4.8e-150 535.0 387 66.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.1e-149 532.3 390 66.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 4.1e-149 531.9 387 66.1
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 4.1e-149 531.9 387 66.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 4.1e-149 531.9 387 66.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 7.0e-149 531.2 393 65.6
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 3.5e-148 528.9 383 66.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.5e-148 528.9 372 68.8
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.5e-148 528.5 399 66.4
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 4.5e-148 528.5 363 69.7
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 5.9e-148 528.1 380 66.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 5.9e-148 528.1 380 66.1
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.0e-147 527.3 367 68.4
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.0e-147 527.3 396 66.7
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.9e-147 525.8 373 68.6
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.9e-147 525.8 388 66.2
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 3.8e-147 525.4 357 69.2
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.1e-146 523.9 364 69.0
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-146 523.9 375 69.6
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.5e-146 523.5 364 68.4
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.9e-146 523.1 366 69.4
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.5e-146 522.7 385 69.4
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 7.2e-146 521.2 406 63.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.2e-145 520.4 380 66.3
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.6e-145 520.0 365 68.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 2.1e-145 519.6 390 64.6
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.1e-145 519.6 363 69.7
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 2.1e-145 519.6 400 64.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.1e-145 518.1 361 71.2
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 8.0e-145 517.7 388 65.7
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 8.0e-145 517.7 348 71.8
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 8.0e-145 517.7 392 65.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.0e-144 517.3 340 69.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.4e-144 516.9 398 66.1
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.8e-144 516.5 363 66.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.3e-144 516.2 361 69.3
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 5.2e-144 515.0 365 66.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.7e-144 514.6 389 67.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 6.7e-144 514.6 378 66.7
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.7e-144 514.6 378 66.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 6.7e-144 514.6 361 68.4
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.0e-143 513.1 339 72.3
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 3.3e-143 512.3 348 70.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 4.4e-143 511.9 337 69.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 4.4e-143 511.9 371 67.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 7.4e-143 511.1 362 68.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 9.7e-143 510.8 352 70.2
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-142 510.4 340 71.2
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.3e-142 510.4 340 70.3
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.2e-142 509.6 396 64.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.8e-142 509.2 385 65.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.3e-142 508.1 333 72.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.3e-142 508.1 347 71.5
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 8.2e-142 507.7 362 67.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.1e-141 507.3 392 63.3
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-141 507.3 370 64.6
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.1e-141 505.8 339 71.4
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 5.3e-141 505.0 385 64.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 7.0e-141 504.6 363 66.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.6e-140 503.4 376 64.6
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 7.7e-140 501.1 387 64.6
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 7.7e-140 501.1 395 65.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.0e-139 500.7 345 70.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.3e-139 500.4 387 63.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.3e-139 500.4 393 63.6
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.7e-139 500.0 380 63.7
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.7e-139 500.0 358 65.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.0e-139 498.4 393 63.4
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.5e-138 496.9 340 67.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 9.4e-138 494.2 355 67.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 3.6e-137 492.3 340 69.1
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 8.0e-137 491.1 383 64.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.0e-136 490.7 354 66.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.4e-136 490.3 387 62.5
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.8e-136 490.0 356 66.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.3e-136 489.6 309 74.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.3e-136 489.6 385 62.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.0e-136 489.2 377 62.6
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 3.0e-136 489.2 376 64.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 5.2e-136 488.4 385 62.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 6.8e-136 488.0 390 63.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.5e-135 486.9 321 69.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.4e-135 485.7 340 67.4
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.4e-135 485.3 359 64.1
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 7.5e-135 484.6 391 61.6
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 3.7e-134 482.3 341 66.0
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 8.3e-134 481.1 347 68.0
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-131 474.2 336 68.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.2e-131 473.0 373 62.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 5.0e-131 471.9 371 60.9
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.5e-130 470.3 300 70.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.4e-130 467.6 388 61.6
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 2.3e-128 463.0 391 58.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 2.0e-127 459.9 404 58.9
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 3.4e-127 459.1 306 69.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.6e-124 450.3 301 69.4
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.7e-124 449.5 321 67.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.5e-124 448.7 379 62.0
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 7.7e-124 448.0 337 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 5.0e-123 445.3 377 58.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 6.8e-120 434.9 350 59.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 7.0e-117 424.9 369 57.7
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.9e-114 416.8 327 59.0
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.3e-114 415.6 321 63.6
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 3.1e-112 409.5 362 56.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.6e-111 406.4 255 72.5
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 5.8e-111 405.2 342 58.8
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.1e-109 399.1 283 68.2
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.0e-103 380.2 304 61.8
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.3e-99 366.7 206 80.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.9e-96 354.8 198 81.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.2e-95 354.4 378 50.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 2.2e-94 350.1 314 56.7
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.5e-90 337.4 198 74.2
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.4e-85 320.9 281 59.8
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 4.6e-84 315.8 219 67.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.3e-83 313.5 177 79.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 7.3e-82 308.5 231 63.2
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.0e-79 300.4 399 41.6
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 7.4e-74 282.0 344 42.7
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.1e-72 278.1 233 63.1
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.9e-69 267.3 304 44.1
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.2e-69 266.2 229 57.6
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.7e-67 258.8 251 55.4
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.5e-63 247.7 352 38.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.6e-63 246.9 221 55.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 3.8e-54 216.5 362 38.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.9e-45 187.6 198 50.5
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.2e-45 186.8 125 71.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.7e-33 146.7 148 52.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.8e-25 120.6 66 81.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 4.5e-23 113.2 108 50.9
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.3e-22 111.7 115 53.9
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.0e-19 102.1 56 80.4


User provided reference genes

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