Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 2.9e-121 438.7 246 100.0
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 8.0e-79 297.7 228 67.5
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.8e-78 294.7 229 74.7
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 2.6e-77 292.7 228 66.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 9.8e-77 290.8 230 64.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.4e-75 286.2 229 69.4
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 4.1e-75 285.4 230 67.8
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 4.5e-74 282.0 236 63.1
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.0e-73 280.8 228 64.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.0e-73 280.8 229 61.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.2e-73 279.6 230 63.5
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.2e-73 279.6 233 66.5
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.8e-73 278.9 227 64.8
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.0e-73 278.5 227 62.1
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 8.5e-73 277.7 230 62.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.5e-73 277.7 232 64.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.5e-72 276.9 232 65.1
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.9e-72 276.6 201 70.1
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.9e-72 276.6 228 63.6
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 5.5e-72 275.0 230 67.4
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.6e-71 273.5 229 67.7
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.7e-71 272.7 234 64.5
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 6.1e-71 271.6 229 60.3
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.1e-71 271.6 228 63.2
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.0e-70 270.8 229 62.4
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.4e-70 270.4 229 63.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.4e-70 270.4 229 62.9
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.4e-70 270.4 230 63.9
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.8e-70 270.0 229 59.8
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.8e-70 270.0 233 61.8
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.3e-70 269.6 230 62.2
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.3e-70 269.6 230 63.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 5.2e-70 268.5 229 62.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 5.2e-70 268.5 229 59.4
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 5.2e-70 268.5 228 60.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.8e-70 268.1 232 62.9
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.0e-69 266.5 229 67.2
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.7e-69 265.0 233 59.7
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 9.8e-69 264.2 232 63.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.8e-69 264.2 233 59.7
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.3e-68 263.8 229 64.2
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.7e-68 263.5 232 61.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.2e-68 263.1 230 66.5
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.7e-68 262.3 231 61.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 4.9e-68 261.9 231 60.2
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.9e-68 261.9 230 67.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 8.3e-68 261.2 229 68.1
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.3e-68 261.2 204 64.7
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 8.3e-68 261.2 231 61.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 8.3e-68 261.2 229 61.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 8.3e-68 261.2 229 58.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.8e-67 260.0 229 63.8
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.4e-67 259.6 262 54.2
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.4e-67 259.6 232 60.8
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 3.1e-67 259.2 232 59.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.1e-67 259.2 229 57.2
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 5.4e-67 258.5 203 65.0
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 5.4e-67 258.5 230 61.7
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.0e-67 258.1 230 64.8
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 9.2e-67 257.7 248 55.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 9.2e-67 257.7 230 60.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 1.2e-66 257.3 233 62.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.2e-66 257.3 232 61.2
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.6e-66 256.9 233 59.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 2.0e-66 256.5 231 61.0
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 2.7e-66 256.1 232 59.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.7e-66 256.1 230 62.6
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.7e-65 253.4 210 67.1
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.8e-65 252.3 231 59.7
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.1e-64 250.8 231 59.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.1e-64 250.8 231 56.7
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 3.3e-64 249.2 233 58.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 5.6e-64 248.4 233 57.9
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 7.3e-64 248.1 233 58.8
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 9.5e-64 247.7 232 59.9
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.1e-63 246.5 239 56.5
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 3.6e-63 245.7 263 54.0
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.6e-63 245.7 229 60.7
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.7e-63 245.4 229 57.6
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 6.1e-63 245.0 227 59.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 8.0e-63 244.6 232 56.5
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.0e-62 244.2 230 59.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.4e-62 243.8 231 58.4
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.8e-62 243.4 236 58.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-62 242.3 176 71.0
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.2e-61 240.7 229 55.5
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.5e-61 240.4 230 56.1
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.6e-61 239.6 229 54.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.4e-61 239.2 230 56.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.4e-61 239.2 230 57.4
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 5.7e-61 238.4 161 75.8
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 7.5e-61 238.0 230 59.1
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 9.8e-61 237.7 230 56.5
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.2e-60 236.5 256 51.6
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.2e-60 236.5 232 56.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 2.9e-60 236.1 232 54.7
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.9e-60 235.3 261 51.3
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 8.3e-60 234.6 228 55.7
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 8.3e-60 234.6 227 55.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 8.3e-60 234.6 227 55.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 8.3e-60 234.6 231 55.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 8.3e-60 234.6 230 56.1
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 8.3e-60 234.6 230 56.1
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 8.3e-60 234.6 261 51.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.1e-59 234.2 189 63.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.1e-59 234.2 227 55.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-59 234.2 230 56.1
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.4e-59 233.8 232 56.5
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 2.4e-59 233.0 192 61.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 5.4e-59 231.9 230 54.3
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.2e-58 230.7 233 53.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.5e-58 229.2 229 56.3
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 7.8e-58 228.0 225 53.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 7.8e-58 228.0 225 53.8
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.0e-57 227.6 232 54.7
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 3.0e-57 226.1 231 61.5
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-56 224.2 239 52.7
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.6e-55 219.2 236 53.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 6.2e-55 218.4 194 65.5
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.1e-54 216.1 231 57.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 8.9e-54 214.5 165 67.9
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.3e-49 200.7 230 50.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.5e-48 197.2 234 50.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 1.9e-48 196.8 193 54.4
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.5e-48 196.4 189 54.5
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.8e-47 193.0 198 60.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.1e-46 191.0 230 47.8
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.3e-44 184.1 139 64.7
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 2.2e-44 183.3 169 65.1
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.5e-42 176.0 237 48.5
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 4.6e-42 175.6 123 69.9
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 8.6e-41 171.4 124 66.1
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.9e-35 153.7 119 71.4
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 1.2e-34 151.0 230 39.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.1e-34 150.2 133 58.6
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.0e-33 147.9 180 43.3
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.3e-33 146.7 184 51.6
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.2e-28 130.2 83 71.1
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.1e-27 127.9 115 52.2
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-26 124.4 131 55.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-26 123.6 131 55.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 6.0e-26 122.1 128 55.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.7e-25 120.6 148 46.6
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 7.3e-24 115.2 89 68.5
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.1e-18 97.1 97 46.4
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.1e-18 97.1 97 46.4
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.1e-18 97.1 97 46.4
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.3e-16 89.7 121 52.9
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.8e-13 79.0 80 57.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.2e-12 77.0 195 30.8
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.9e-12 75.9 140 33.6
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 1.1e-11 74.7 102 39.2
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.9e-11 73.9 59 71.2
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.1e-09 65.9 44 70.5
PRCOL_00003248 Prasinoderma coloniale HOM05D004631 ORTHO05D005223 6.7e-09 65.5 152 30.3
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 7.4e-08 62.0 102 37.3
CDE08G0115 Ceratophyllum demersum HOM05D004631 ORTHO05D005223 2.1e-07 60.5 59 57.6
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 2.8e-07 60.1 61 62.3
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 3.1e-06 56.6 35 74.3
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 5.3e-06 55.8 51 52.9
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.9e-06 55.5 93 34.4
CBR_g53680 Chara braunii HOM05D004631 ORTHO05D005223 6.9e-06 55.5 75 45.3
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 9.0e-06 55.1 122 30.3


User provided reference genes

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