Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.5e-53 211.8 107 100.0
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.2e-47 193.0 107 88.8
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.9e-46 188.0 107 87.9
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.9e-46 188.0 107 87.9
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.5e-45 186.0 107 86.9
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 3.3e-45 184.9 107 86.9
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.3e-45 184.5 107 86.0
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 4.3e-45 184.5 107 85.0
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 5.6e-45 184.1 107 86.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 5.6e-45 184.1 107 84.1
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.3e-45 183.7 107 85.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 7.3e-45 183.7 107 86.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 9.5e-45 183.3 107 85.0
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 1.2e-44 183.0 107 85.0
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.6e-44 182.6 107 85.0
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 2.1e-44 182.2 107 86.0
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 2.8e-44 181.8 107 86.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 2.8e-44 181.8 107 84.1
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 2.8e-44 181.8 107 85.0
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 8.1e-44 180.3 107 83.2
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.1e-43 179.9 107 83.2
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.4e-43 179.5 107 83.2
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.8e-43 179.1 107 82.2
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.8e-43 179.1 107 82.2
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.8e-43 179.1 107 82.2
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 1.8e-43 179.1 105 82.9
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.1e-43 178.3 107 81.3
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 4.0e-43 177.9 105 83.8
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 4.0e-43 177.9 107 83.2
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 5.2e-43 177.6 107 82.2
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 6.8e-43 177.2 105 81.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 8.9e-43 176.8 107 84.1
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 8.9e-43 176.8 107 83.2
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 1.2e-42 176.4 107 82.2
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.5e-42 176.0 97 86.6
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.0e-42 175.6 107 80.4
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.6e-42 175.3 107 82.2
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.6e-42 175.3 107 82.2
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 2.6e-42 175.3 106 83.0
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 3.4e-42 174.9 105 81.9
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 4.4e-42 174.5 107 80.4
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 4.4e-42 174.5 105 81.0
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 7.6e-42 173.7 102 82.4
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 9.9e-42 173.3 107 80.4
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 1.3e-41 172.9 101 83.2
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.2e-41 172.2 105 79.0
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 2.2e-41 172.2 106 81.1
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.9e-41 171.8 107 81.3
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 8.4e-41 170.2 107 77.6
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 8.4e-41 170.2 105 80.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.1e-40 169.9 105 79.0
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-40 169.9 107 79.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.4e-40 169.5 97 83.5
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.9e-40 169.1 105 78.1
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 1.9e-40 169.1 97 82.5
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 1.9e-40 169.1 97 84.5
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 1.9e-40 169.1 98 83.7
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.4e-40 168.7 105 77.1
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.4e-40 168.7 99 82.8
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 2.4e-40 168.7 107 79.4
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 3.2e-40 168.3 97 83.5
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 4.1e-40 167.9 97 83.5
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 5.4e-40 167.5 97 84.5
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 9.2e-40 166.8 105 79.0
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.2e-39 166.4 107 78.5
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.6e-39 166.0 97 83.5
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.6e-39 166.0 107 77.6
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 1.6e-39 166.0 107 76.6
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.6e-39 166.0 107 76.6
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-39 165.6 107 75.7
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.1e-39 165.6 99 80.8
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.1e-39 165.6 99 80.8
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 2.1e-39 165.6 107 77.6
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 2.1e-39 165.6 107 77.6
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 2.7e-39 165.2 107 75.7
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 3.5e-39 164.9 107 77.6
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.5e-39 164.9 95 82.1
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 4.6e-39 164.5 106 79.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 6.0e-39 164.1 105 77.1
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 6.0e-39 164.1 107 77.6
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.0e-38 163.3 105 76.2
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.0e-38 163.3 107 76.6
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.3e-38 162.9 107 75.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 1.3e-38 162.9 107 75.7
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.7e-38 162.5 107 76.6
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 2.3e-38 162.2 97 80.4
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.3e-38 162.2 87 94.3
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 3.0e-38 161.8 107 77.6
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 6.6e-38 160.6 107 75.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 8.6e-38 160.2 107 74.8
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 8.6e-38 160.2 108 75.0
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 1.5e-37 159.5 107 75.7
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 5.6e-37 157.5 97 79.4
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.2e-36 156.4 107 72.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.6e-36 156.0 107 75.7
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 3.6e-36 154.8 97 75.3
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 4.7e-36 154.5 105 73.3
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 6.2e-36 154.1 97 77.3
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.2e-36 154.1 97 77.3
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 1.4e-35 152.9 107 72.9
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 1.8e-35 152.5 106 69.8
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 5.2e-35 151.0 97 76.3
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 6.9e-35 150.6 97 74.2
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 6.9e-35 150.6 97 74.2
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 9.0e-35 150.2 100 72.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 9.0e-35 150.2 97 75.3
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 9.0e-35 150.2 124 63.7
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 1.2e-34 149.8 97 74.2
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 2.0e-34 149.1 97 73.2
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 3.4e-34 148.3 96 76.0
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 7.6e-34 147.1 97 72.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-33 146.4 97 74.2
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.7e-33 146.0 97 72.2
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.2e-33 145.6 97 72.2
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.2e-33 145.6 96 75.0
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.9e-33 145.2 95 74.7
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 3.8e-33 144.8 126 61.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 1.1e-32 143.3 105 70.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.9e-32 142.5 100 73.0
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 3.2e-32 141.7 108 67.6
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 3.2e-32 141.7 97 71.1
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.2e-32 141.7 113 68.1
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 3.2e-32 141.7 97 71.1
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 4.2e-32 141.4 100 71.0
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.7e-30 133.7 100 67.0
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 2.8e-28 128.6 111 64.0
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 4.8e-28 127.9 99 66.7
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 7.6e-26 120.6 107 55.1
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 8.4e-25 117.1 121 52.1
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 1.1e-24 116.7 91 56.0
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 7.9e-23 110.5 119 49.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 4.3e-21 104.8 90 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 7.4e-21 104.0 77 57.1
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.3e-20 103.2 68 72.1
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.8e-10 67.8 38 78.9
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.2e-08 61.6 38 78.9
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 3.5e-07 58.5 66 42.4
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 3.0e-06 55.5 31 80.6


User provided reference genes

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