Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 6.4e-44 180.3 85 100.0
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.4e-38 161.8 85 88.2
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.4e-38 161.8 85 85.9
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.1e-38 161.4 85 87.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.3e-38 160.6 85 85.9
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 9.9e-37 156.4 84 85.7
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.3e-36 156.0 86 86.0
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.3e-36 156.0 85 83.5
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-36 155.6 84 85.7
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.7e-36 155.6 84 85.7
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 2.2e-36 155.2 85 82.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.2e-36 155.2 84 82.1
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-36 154.5 84 84.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 4.9e-36 154.1 89 82.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 4.9e-36 154.1 89 82.0
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 6.4e-36 153.7 76 90.8
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 8.4e-36 153.3 85 81.2
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.1e-35 152.9 94 76.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.4e-35 152.5 85 81.2
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.4e-35 151.8 78 87.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 2.4e-35 151.8 85 77.6
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 3.2e-35 151.4 85 80.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.2e-35 151.0 80 83.8
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.2e-35 151.0 80 83.8
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 4.2e-35 151.0 84 79.8
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.4e-35 150.6 78 85.9
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 7.1e-35 150.2 94 74.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 7.1e-35 150.2 85 84.7
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 9.3e-35 149.8 86 79.1
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 80 82.5
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 80 82.5
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.6e-34 149.1 79 82.3
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-34 149.1 85 78.8
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 2.1e-34 148.7 85 78.8
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 3.5e-34 147.9 85 76.5
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 4.6e-34 147.5 86 77.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.6e-34 147.5 86 79.1
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.6e-34 147.5 86 79.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.0e-34 147.1 85 76.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.3e-33 146.0 86 77.9
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.3e-33 146.0 85 76.5
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.8e-33 145.6 85 81.2
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.3e-33 145.2 85 78.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.0e-33 144.8 86 77.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.0e-33 144.8 86 77.9
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.9e-33 144.4 83 78.3
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 6.7e-33 143.7 89 74.2
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 6.7e-33 143.7 84 70.2
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 8.7e-33 143.3 85 74.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 8.7e-33 143.3 86 76.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 8.7e-33 143.3 83 78.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.1e-32 142.9 78 79.5
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.9e-32 142.1 84 79.8
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.9e-32 142.1 86 79.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.5e-32 141.7 84 78.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 3.3e-32 141.4 84 77.4
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 9.6e-32 139.8 84 77.4
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 9.6e-32 139.8 84 72.6
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 9.6e-32 139.8 80 75.0
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.3e-31 139.4 84 78.6
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-31 139.4 73 83.6
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.3e-31 139.4 84 76.2
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.3e-31 139.4 77 76.6
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.6e-31 139.0 84 77.4
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.1e-31 138.7 85 75.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 3.7e-31 137.9 86 75.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 3.7e-31 137.9 80 77.5
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.7e-31 137.9 76 82.9
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 85 72.9
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 8.1e-31 136.7 80 78.8
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.1e-30 136.3 77 75.3
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.4e-30 136.0 73 79.5
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.8e-30 135.6 82 75.6
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.8e-30 135.6 82 75.6
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.8e-30 135.6 85 72.9
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 3.1e-30 134.8 84 76.2
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 3.1e-30 134.8 78 73.1
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.1e-30 134.8 85 72.9
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.1e-30 134.8 75 76.0
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.1e-30 134.8 75 76.0
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.1e-30 134.8 85 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 4.0e-30 134.4 85 70.6
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 4.0e-30 134.4 85 72.9
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 5.3e-30 134.0 85 72.9
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 6.9e-30 133.7 82 74.4
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 6.9e-30 133.7 87 70.1
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 9.0e-30 133.3 90 72.2
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.5e-29 132.5 78 71.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.0e-29 132.1 82 68.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 2.0e-29 132.1 84 67.9
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.6e-29 131.7 82 68.3
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.4e-29 131.3 82 72.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 4.5e-29 131.0 83 67.5
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 5.8e-29 130.6 84 72.6
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 7.6e-29 130.2 87 67.8
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 9.9e-29 129.8 70 88.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 9.9e-29 129.8 70 88.6
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 9.9e-29 129.8 73 74.0
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-28 129.4 78 70.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 76 71.1
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.7e-28 129.0 86 70.9
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.9e-28 128.3 68 82.4
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 3.8e-28 127.9 68 86.8
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 3.8e-28 127.9 63 88.9
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 6.4e-28 127.1 76 69.7
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 6.4e-28 127.1 77 68.8
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 6.4e-28 127.1 68 77.9
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.4e-27 125.9 91 61.5
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.4e-27 125.9 85 71.8
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.4e-27 125.9 93 64.5
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.4e-27 125.9 68 82.4
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.9e-27 125.6 86 68.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 65 80.0
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 5.5e-27 124.0 77 71.4
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.5e-27 124.0 68 79.4
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.5e-27 124.0 70 80.0
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 7.1e-27 123.6 85 68.2
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 9.3e-27 123.2 77 68.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 9.3e-27 123.2 94 59.6
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.5e-26 121.3 87 67.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.6e-26 120.9 75 70.7
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 7.9e-26 120.2 86 65.1
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.3e-25 118.6 86 62.8
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.9e-25 117.9 72 73.6
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.1e-24 116.3 111 50.5
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.5e-24 115.9 86 68.6
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 2.5e-24 115.2 85 68.2
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 3.3e-24 114.8 71 73.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 9.6e-24 113.2 85 68.2
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 9.6e-24 113.2 53 92.5
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.3e-23 112.8 82 63.4
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 3.7e-23 111.3 52 92.3
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 6.2e-23 110.5 68 75.0
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 6.2e-23 110.5 59 79.7
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 8.2e-23 110.2 71 63.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 8.2e-23 110.2 98 57.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.4e-22 108.6 87 57.5
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 2.4e-22 108.6 69 73.9
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.0e-22 107.8 55 81.8
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.3e-22 107.5 54 83.3
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 2.6e-21 105.1 69 55.1
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.6e-21 105.1 52 90.4
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.2e-20 102.1 56 80.4
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.4e-19 99.4 52 84.6
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 9.3e-19 96.7 76 53.9
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.6e-18 95.9 97 50.5
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.1e-18 95.5 57 66.7
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.5e-18 94.7 101 51.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.0e-17 91.7 68 64.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.5e-16 89.4 79 46.8
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 7.4e-16 87.0 72 58.3
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 4.8e-15 84.3 40 92.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 4.1e-14 81.3 51 74.5
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.4e-13 78.2 59 59.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.2e-11 71.6 46 65.2
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 5.5e-11 70.9 63 47.6
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 4.6e-10 67.8 53 60.4
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.3e-09 65.5 62 41.9
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 8.8e-09 63.5 115 39.1
Hund19448 Selenicereus undatus HOM05D002137 ORTHO05D002144 4.8e-07 57.8 138 30.4
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 8.2e-07 57.0 44 54.5


User provided reference genes

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