Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 9.4e-168 593.6 327 100.0
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.9e-97 359.0 195 95.4
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.9e-97 359.0 195 95.4
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.9e-97 359.0 195 95.4
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 1.5e-96 357.1 232 82.8
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 3.3e-96 355.9 195 94.9
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.1e-91 340.9 195 91.8
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.4e-91 339.7 195 91.3
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 7.1e-91 338.2 195 90.8
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 9.3e-91 337.8 192 92.7
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 2.7e-90 336.3 195 90.3
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 2.7e-90 336.3 195 90.3
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 2.7e-90 336.3 195 90.3
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 2.7e-90 336.3 195 90.3
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 6.0e-90 335.1 197 89.3
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 6.0e-90 335.1 197 89.3
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-89 334.3 221 82.8
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.7e-89 333.6 194 90.2
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.7e-89 333.6 194 90.2
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.9e-89 332.4 190 92.1
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 1.9e-88 330.1 196 88.8
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 1.9e-88 330.1 196 88.8
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 7.3e-88 328.2 194 89.2
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.3e-87 327.4 197 89.8
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.8e-87 326.2 195 88.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.8e-87 325.5 232 75.4
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 6.2e-87 325.1 197 89.3
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 4.0e-86 322.4 195 87.2
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.8e-85 318.5 237 73.0
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.9e-84 316.2 197 85.3
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.9e-84 316.2 197 85.3
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 6.4e-84 315.1 211 81.5
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 3.2e-83 312.8 190 86.8
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.2e-82 310.8 175 92.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 6.2e-79 298.5 232 72.8
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 6.9e-78 295.0 195 80.5
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.2e-77 294.3 195 79.0
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.4e-75 287.3 167 89.8
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 3.2e-75 286.2 195 80.0
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 4.6e-74 282.3 196 79.1
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.8e-73 280.4 221 72.9
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 4.3e-72 275.8 148 96.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.3e-72 275.8 232 69.0
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 5.3e-70 268.9 183 80.9
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 4.0e-62 242.7 154 84.4
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 3.5e-58 229.6 131 88.5
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.6e-58 229.2 168 75.0
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.3e-56 222.6 209 60.8
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.6e-53 213.4 122 88.5
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 4.5e-53 212.6 116 93.1
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 5.0e-52 209.1 122 88.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.4e-46 191.0 175 62.3
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.3e-44 184.5 108 86.1
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.7e-44 184.1 200 57.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 3.3e-40 169.9 95 91.6
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 6.3e-39 165.6 115 78.3
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-38 164.1 213 53.5
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 4.1e-38 162.9 100 85.0
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.2e-37 161.4 199 54.3
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 4.4e-32 142.9 81 91.4
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 5.7e-32 142.5 80 92.5
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 1.3e-31 141.4 103 76.7
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 1.3e-28 131.3 81 86.4
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 4.0e-25 119.8 93 72.0
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 4.1e-22 109.8 68 88.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.2e-19 100.1 123 52.8
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.2e-19 100.1 61 83.6
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 7.2e-19 99.0 57 78.9
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.2e-19 99.0 64 73.4
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.1e-18 95.9 91 60.4
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.4e-14 84.7 49 87.8
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.2e-13 81.6 63 74.6
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.7e-12 77.8 48 85.4
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.7e-12 77.8 44 90.9
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 2.9e-12 77.0 48 83.3
Nitab4.5_0000172g2130 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.3e-09 67.4 39 84.6
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 6.8e-09 65.9 37 86.5
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 5.7e-08 62.8 37 83.8
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 5.7e-08 62.8 37 83.8


User provided reference genes

Program Settings