Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.7e-74 282.0 144 100.0
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.9e-27 126.3 131 55.7
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.9e-27 126.3 131 55.7
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.6e-23 113.2 131 49.6
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.1e-22 110.5 126 55.6
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.4e-22 110.2 124 51.6
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.4e-22 110.2 125 53.6
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 5.2e-22 108.2 131 51.9
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 5.2e-22 108.2 123 50.4
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 2.0e-21 106.3 134 45.5
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 4.4e-21 105.1 117 53.0
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 7.6e-21 104.4 130 51.5
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.3e-20 103.6 109 54.1
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 2.9e-20 102.4 130 46.2
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.9e-20 102.4 86 62.8
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 4.9e-20 101.7 123 47.2
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 4.9e-20 101.7 118 50.0
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 4.9e-20 101.7 136 44.1
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 3.2e-19 99.0 120 51.7
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.2e-18 97.1 111 48.6
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.1e-18 96.3 126 43.7
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.7e-18 95.9 135 45.2
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.7e-18 95.9 120 50.0
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.5e-18 95.5 127 44.9
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.5e-18 95.5 117 52.1
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 1.0e-17 94.0 129 45.0
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.3e-17 92.8 82 64.6
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 6.6e-17 91.3 75 65.3
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 8.7e-17 90.9 77 62.3
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 1.1e-16 90.5 142 43.7
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.9e-16 89.7 142 45.1
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.9e-16 89.7 142 45.1
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.9e-16 89.7 113 50.4
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.5e-16 89.4 114 53.5
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.3e-16 88.6 142 43.7
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.3e-16 88.6 142 43.7
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 7.3e-16 87.8 110 53.6
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 9.6e-16 87.4 121 44.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.6e-16 87.4 143 43.4
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.6e-16 87.4 142 43.7
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.3e-15 87.0 75 60.0
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.3e-15 87.0 111 49.5
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.6e-15 86.7 71 63.4
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.1e-15 86.3 71 64.8
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.1e-15 86.3 70 64.3
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 2.8e-15 85.9 83 62.7
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.6e-15 85.5 81 56.8
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 3.6e-15 85.5 71 64.8
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 4.8e-15 85.1 128 41.4
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 4.8e-15 85.1 75 60.0
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 4.8e-15 85.1 70 65.7
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 6.2e-15 84.7 81 55.6
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 6.2e-15 84.7 77 62.3
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 6.2e-15 84.7 115 44.3
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.2e-15 84.7 66 69.7
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 8.1e-15 84.3 71 63.4
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 8.1e-15 84.3 127 42.5
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 8.1e-15 84.3 106 50.0
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 1.4e-14 83.6 73 61.6
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.4e-14 83.6 77 62.3
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.8e-14 83.2 123 45.5
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.8e-14 83.2 71 63.4
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.8e-14 83.2 76 65.8
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.0e-14 82.0 79 63.3
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 5.3e-14 81.6 71 62.0
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 5.3e-14 81.6 71 62.0
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 5.3e-14 81.6 71 62.0
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 5.3e-14 81.6 71 62.0
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 5.3e-14 81.6 71 62.0
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 5.3e-14 81.6 87 55.2
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 9.0e-14 80.9 116 42.2
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 2.0e-13 79.7 85 55.3
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 2.6e-13 79.3 121 43.0
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 5.8e-13 78.2 101 47.5
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 7.6e-13 77.8 109 45.9
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 1.3e-12 77.0 115 42.6
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 1.3e-12 77.0 116 46.6
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.9e-12 75.9 119 41.2
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.4e-11 73.6 86 52.3
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.4e-11 73.6 116 40.5
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.4e-11 72.8 71 52.1
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 4.2e-11 72.0 109 45.9
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 4.2e-11 72.0 118 39.0
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 4.2e-11 72.0 156 35.9
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 5.4e-11 71.6 62 59.7
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 5.4e-11 71.6 114 43.0
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 9.3e-11 70.9 127 37.8
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 9.3e-11 70.9 112 44.6
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 2.1e-10 69.7 141 35.5
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 2.1e-10 69.7 136 37.5
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 2.1e-10 69.7 114 39.5
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 3.5e-10 68.9 137 35.0
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 4.6e-10 68.6 108 38.0
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 6.0e-10 68.2 114 44.7
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 6.0e-10 68.2 122 36.9
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 7.9e-10 67.8 129 34.9
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.0e-09 67.4 125 39.2
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 1.0e-09 67.4 95 45.3
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 1.3e-09 67.0 117 39.3
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.3e-09 67.0 108 39.8
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.3e-09 67.0 121 35.5
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.8e-09 66.6 74 47.3
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.8e-09 66.6 68 58.8
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 2.3e-09 66.2 131 38.2
Nitab4.5_0000028g0360 Nicotiana tabacum HOM05D002758 ORTHO05D002885 3.0e-09 65.9 138 34.1
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.9e-09 65.5 72 47.2
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 5.1e-09 65.1 77 44.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 8.7e-09 64.3 91 45.1
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 1.1e-08 63.9 127 39.4
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.1e-08 63.9 77 44.2
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 1.1e-08 63.9 114 36.8
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 2.5e-08 62.8 74 47.3
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 2.5e-08 62.8 76 53.9
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-08 62.4 79 44.3
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 3.3e-08 62.4 117 35.9
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 4.3e-08 62.0 109 35.8
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 4.3e-08 62.0 126 35.7
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 5.6e-08 61.6 133 36.8
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 5.6e-08 61.6 135 33.3
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 5.6e-08 61.6 126 33.3
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 7.4e-08 61.2 74 45.9
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 9.6e-08 60.8 72 47.2
Actinidia21981 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.3e-07 60.5 128 31.2
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 1.3e-07 60.5 76 43.4
Lsat_1_v5_gn_7_45161 Lactuca sativa HOM05D002758 ORTHO05D002885 1.6e-07 60.1 120 38.3
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 1.6e-07 60.1 131 32.8
EL10Ac8g18667 Beta vulgaris HOM05D002758 ORTHO05D002885 2.1e-07 59.7 130 33.8
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 2.1e-07 59.7 136 34.6
DCAR_014886 Daucus carota HOM05D002758 ORTHO05D002885 2.8e-07 59.3 115 34.8
SalBow1G1971 Salvia bowleyana HOM05D002758 ORTHO05D002885 2.8e-07 59.3 126 34.9
Oeu058050.1 Olea europaea HOM05D002758 ORTHO05D002885 3.7e-07 58.9 132 31.8
DCAR_017810 Daucus carota HOM05D002758 ORTHO05D002885 4.8e-07 58.5 112 32.1
Lsat_1_v5_gn_5_95300 Lactuca sativa HOM05D002758 ORTHO05D002885 4.8e-07 58.5 120 31.7
Nitab4.5_0006661g0030 Nicotiana tabacum HOM05D002758 ORTHO05D002885 4.8e-07 58.5 89 39.3
Peaxi162Scf00046g00524 Petunia axillaris HOM05D002758 ORTHO05D002885 4.8e-07 58.5 76 42.1
Sopen07g004170 Solanum pennellii HOM05D002758 ORTHO05D002885 4.8e-07 58.5 148 35.8
vmacro20564 Vaccinium macrocarpon HOM05D002758 ORTHO05D002885 4.8e-07 58.5 129 31.0
Oeu034104.1 Olea europaea HOM05D002758 ORTHO05D002885 6.2e-07 58.2 139 31.7
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 6.2e-07 58.2 127 33.1
Solyc07g008280.4 Solanum lycopersicum HOM05D002758 ORTHO05D002885 8.1e-07 57.8 163 34.4
Nn8g39466 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.1e-06 57.4 142 28.9
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-06 57.0 77 45.5
Actinidia40476 Actinidia chinensis HOM05D002758 ORTHO05D002885 1.8e-06 56.6 127 31.5
Nn2g12045 Nelumbo nucifera HOM05D002758 ORTHO05D002885 1.8e-06 56.6 130 30.8
PGSC0003DMG400019894 Solanum tuberosum HOM05D002758 ORTHO05D002885 1.8e-06 56.6 153 34.6
Duzib187G0530 Durio zibethinus HOM05D002758 ORTHO05D002885 2.4e-06 56.2 135 32.6
Hma1.2p1_0018F.1_g012340 Hydrangea macrophylla HOM05D002758 ORTHO05D002885 2.4e-06 56.2 135 30.4
Manes.06G058000 Manihot esculenta HOM05D002758 ORTHO05D002885 2.4e-06 56.2 140 31.4
Hund26508 Selenicereus undatus HOM05D002758 ORTHO05D002885 2.4e-06 56.2 128 32.0
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 4.0e-06 55.5 119 36.1
CSS0022572 Camellia sinensis var. sinensis HOM05D002758 ORTHO05D002885 5.3e-06 55.1 143 32.9
CAN.G403.8 Capsicum annuum HOM05D002758 ORTHO05D002885 6.9e-06 54.7 149 29.5
Potri.006G069100 Populus trichocarpa HOM05D002758 ORTHO05D002885 6.9e-06 54.7 151 28.5
Migut.K00449 Erythranthe guttata HOM05D002758 ORTHO05D002885 9.0e-06 54.3 80 38.8


User provided reference genes

Program Settings