Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 4.1e-230 801.2 452 100.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 2.3e-148 529.6 425 72.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 6.7e-132 474.9 410 68.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-130 470.7 406 67.2
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.3e-130 470.7 406 67.2
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 8.2e-130 468.0 405 67.4
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 3.1e-129 466.1 408 65.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 7.7e-128 461.5 406 65.8
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.8e-127 459.1 403 66.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 8.5e-127 458.0 405 65.9
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.5e-126 456.4 424 63.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 9.4e-126 454.5 406 66.3
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.1e-123 447.6 405 64.9
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 1.5e-123 447.2 432 62.3
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 2.6e-123 446.4 411 62.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 4.4e-123 445.7 422 63.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.2e-122 443.4 406 63.8
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 2.2e-122 443.4 412 63.8
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 4.8e-122 442.2 405 64.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 6.3e-122 441.8 406 62.8
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 6.3e-122 441.8 405 64.7
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.1e-121 441.0 437 62.2
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.1e-121 439.5 423 61.9
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 4.1e-121 439.1 415 64.6
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.5e-120 437.2 407 63.6
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-120 436.8 382 66.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 3.4e-120 436.0 423 61.7
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.5e-120 435.6 426 62.4
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.2e-119 433.3 405 62.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.8e-119 432.6 406 61.3
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.0e-119 432.2 405 62.0
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 8.5e-119 431.4 405 61.7
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.2e-118 428.3 405 62.2
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.7e-117 426.4 426 60.1
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.4e-116 424.1 428 60.5
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 3.0e-116 422.9 407 60.7
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 5.2e-116 422.2 412 60.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.0e-115 420.2 405 60.7
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 9.7e-115 417.9 426 58.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-114 417.5 418 59.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.7e-114 417.2 404 59.7
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 6.3e-114 415.2 373 63.3
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 2.4e-113 413.3 407 60.0
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.0e-112 410.2 404 58.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 4.5e-112 409.1 386 63.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 5.9e-112 408.7 404 59.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 7.7e-112 408.3 416 58.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.7e-112 408.3 420 57.4
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 7.7e-112 408.3 431 58.0
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.3e-111 407.5 400 62.0
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.2e-111 406.8 411 58.2
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 3.8e-111 406.0 405 58.3
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 3.8e-111 406.0 418 58.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.9e-110 403.7 407 59.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.2e-110 402.9 406 58.4
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 7.2e-110 401.7 419 56.8
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 7.2e-110 401.7 428 55.4
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 9.4e-110 401.4 426 56.6
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 2.1e-109 400.2 421 56.5
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 2.7e-109 399.8 373 63.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 3.6e-109 399.4 454 55.3
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 3.6e-109 399.4 405 58.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.4e-108 397.5 432 56.2
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 3.0e-108 396.4 418 56.7
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.0e-108 396.4 413 57.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 4.0e-108 396.0 386 61.9
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 5.2e-108 395.6 414 56.5
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 5.2e-108 395.6 412 57.5
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.5e-107 394.0 418 56.9
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.6e-107 393.3 372 62.6
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 2.6e-107 393.3 372 62.6
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-106 391.0 412 57.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.7e-106 390.6 405 57.3
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.2e-106 390.2 403 58.3
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.8e-106 389.8 423 56.3
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.8e-106 389.0 422 54.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.8e-106 389.0 428 57.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 7.0e-105 385.2 411 56.7
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 7.0e-105 385.2 417 57.3
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.6e-104 384.0 432 56.2
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.0e-104 383.6 415 57.3
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 2.0e-104 383.6 412 57.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 2.7e-104 383.3 407 55.8
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.9e-103 379.8 344 65.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 5.0e-103 379.0 417 56.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.2e-102 376.3 378 58.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-101 374.4 417 55.6
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.4e-100 370.9 417 55.9
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 3.0e-100 369.8 417 55.2
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 8.3e-98 361.7 417 54.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 2.4e-97 360.1 409 54.5
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 3.1e-97 359.8 343 60.3
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.6e-96 357.5 441 52.6
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.7e-96 356.7 430 54.2
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.7e-96 355.1 346 60.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.9e-95 353.2 380 57.1
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 8.6e-95 351.7 361 60.9
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.1e-94 351.3 344 62.2
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.2e-94 349.4 364 60.4
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 3.6e-93 346.3 343 60.6
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.4e-89 333.6 326 61.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 5.6e-86 322.4 422 51.9
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 2.1e-85 320.5 404 51.2
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 2.8e-85 320.1 447 48.8
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.5e-83 312.0 402 49.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.9e-82 309.3 389 48.3
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.0e-81 305.4 283 62.5
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 7.0e-73 278.9 382 48.4
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.5e-72 276.6 281 58.4
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.5e-70 268.5 274 57.7
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 7.1e-65 252.3 228 63.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 6.6e-63 245.7 424 42.2
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.3e-55 221.5 347 45.2
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.3e-55 221.5 207 60.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.4e-52 210.7 271 51.7
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 9.0e-52 208.8 381 43.6
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-49 201.8 203 57.1
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-48 198.0 318 45.9
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 5.6e-46 189.5 377 36.9
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.3e-45 188.3 369 40.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.8e-44 184.5 195 56.4
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 3.9e-39 166.8 230 50.0
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.9e-38 164.5 178 55.6
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 9.6e-38 162.2 152 60.5
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.8e-37 159.8 244 48.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 8.1e-37 159.1 434 31.3
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-36 158.7 201 51.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.7e-32 144.1 433 32.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-30 138.7 160 54.4
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 6.9e-28 129.4 133 59.4
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 8.4e-26 122.5 156 50.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.9e-23 113.6 176 45.5
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 9.0e-20 102.4 115 53.0
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 6.1e-16 89.7 67 71.6
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.0e-15 89.0 107 52.3
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 1.4e-15 88.6 95 55.8
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.7e-15 86.3 71 71.8
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 9.1e-12 75.9 190 35.8
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 5.0e-10 70.1 68 61.8
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.8e-07 61.6 46 67.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 5.1e-07 60.1 183 29.0
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 2.6e-06 57.8 37 73.0


User provided reference genes

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