Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.6e-177 624.8 307 100.0
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.4e-117 424.9 232 93.1
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-89 333.6 230 78.3
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-72 277.7 234 67.9
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.3e-69 264.6 274 59.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 2.6e-63 246.5 237 59.9
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 5.9e-63 245.4 229 58.5
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.1e-61 241.1 229 57.6
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-61 241.1 230 60.9
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 3.0e-59 233.0 230 58.7
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 2.8e-57 226.5 230 56.5
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.8e-57 226.5 230 56.5
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 5.3e-56 222.2 238 53.8
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.9e-56 221.9 232 56.5
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 6.9e-56 221.9 228 57.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.2e-55 221.1 232 55.2
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 2.6e-55 219.9 232 56.5
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.4e-55 219.5 236 53.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 4.5e-55 219.2 233 56.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.3e-54 217.6 224 56.7
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.7e-54 217.2 224 57.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.2e-54 216.9 233 55.4
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.9e-54 216.5 224 56.7
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.9e-54 216.5 233 55.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 3.8e-54 216.1 228 54.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.0e-54 215.7 232 55.2
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 6.5e-54 215.3 225 54.7
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 6.5e-54 215.3 241 53.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 6.5e-54 215.3 231 53.7
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 6.5e-54 215.3 222 56.8
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 8.5e-54 214.9 223 56.5
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 8.5e-54 214.9 225 54.7
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 8.5e-54 214.9 227 55.1
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.1e-53 214.5 225 57.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.1e-53 214.5 225 55.6
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.1e-53 214.5 225 56.0
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.9e-53 213.8 233 54.9
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.5e-53 213.4 225 55.6
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.5e-53 213.4 227 55.5
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 5.5e-53 212.2 220 55.9
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 9.4e-53 211.5 234 53.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.2e-52 211.1 224 54.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.6e-52 210.7 232 53.4
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.6e-52 210.7 232 54.3
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.6e-52 210.7 231 52.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.1e-52 210.3 225 54.7
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.6e-52 209.5 215 55.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.6e-52 209.5 225 54.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.7e-52 209.1 224 55.8
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.7e-52 209.1 225 53.8
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 6.1e-52 208.8 224 54.9
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 6.1e-52 208.8 228 53.5
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.1e-52 208.8 241 52.3
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.9e-52 208.4 232 53.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.8e-51 207.2 224 55.8
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 2.3e-51 206.8 227 53.7
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.0e-51 206.5 229 55.0
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 5.2e-51 205.7 228 52.2
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 6.7e-51 205.3 233 52.4
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 6.7e-51 205.3 235 53.6
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.1e-50 204.5 224 55.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.1e-50 204.5 228 52.6
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 1.5e-50 204.1 224 53.6
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.5e-50 204.1 225 53.3
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 2.0e-50 203.8 224 51.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.0e-50 203.8 224 54.5
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 3.3e-50 203.0 224 51.8
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.4e-50 202.6 225 52.9
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.7e-50 202.2 227 52.9
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 9.7e-50 201.4 227 52.0
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.3e-49 201.1 223 53.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.7e-49 200.7 232 52.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.7e-49 200.7 232 51.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.2e-49 200.3 232 50.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.8e-49 199.9 224 55.4
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 3.7e-49 199.5 224 53.1
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 4.8e-49 199.1 227 53.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 8.2e-49 198.4 224 52.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 8.2e-49 198.4 228 51.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.2e-49 198.4 204 57.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.4e-48 196.8 224 51.8
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 9.1e-48 194.9 224 52.7
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.0e-47 193.7 223 52.0
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.0e-47 193.7 224 50.9
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.6e-47 193.4 226 51.3
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.5e-47 193.0 224 50.4
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.5e-47 193.0 224 51.3
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 7.7e-47 191.8 265 46.0
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.0e-46 191.4 224 50.0
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.0e-46 191.4 224 50.9
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.7e-46 190.7 224 50.0
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.7e-46 190.7 224 49.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.7e-46 190.7 224 51.8
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.9e-46 189.9 231 48.9
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.9e-46 189.9 231 48.9
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.9e-46 189.9 231 48.9
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.8e-46 189.5 224 49.1
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-46 189.5 224 49.1
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.8e-46 189.5 224 49.1
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.8e-46 189.5 224 49.1
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.5e-46 188.7 224 50.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 8.5e-46 188.3 224 48.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 1.1e-45 188.0 210 52.4
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-45 188.0 224 49.6
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.1e-45 188.0 224 49.6
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.1e-45 188.0 225 48.9
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.5e-45 187.6 251 48.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.5e-45 186.8 224 49.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.2e-45 186.4 224 49.6
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.2e-45 186.4 224 49.6
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 9.4e-45 184.9 224 49.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-44 184.5 224 48.2
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 2.1e-44 183.7 224 50.4
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.7e-44 183.3 220 48.6
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 1.0e-43 181.4 215 49.3
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-43 181.0 168 62.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.2e-43 179.1 240 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 7.5e-42 175.3 230 45.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-41 174.5 206 50.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.3e-41 174.5 211 49.8
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 4.8e-41 172.6 224 48.2
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.1e-40 171.4 229 48.0
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.9e-39 165.6 227 45.4
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.5e-37 161.0 218 44.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.2e-36 157.9 211 48.8
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.1e-36 157.1 174 54.6
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.7e-36 156.8 266 47.0
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 3.0e-35 153.3 231 43.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 6.8e-35 152.1 233 40.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.2e-28 131.3 167 48.5
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.7e-28 129.4 154 50.0
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-25 120.2 195 37.4
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.3e-25 119.0 195 37.4
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-24 118.2 195 36.9
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.4e-24 117.9 195 36.9
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.5e-21 107.8 197 41.1
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.7e-20 102.8 81 67.9
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.0e-18 97.4 88 56.8
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.4e-18 96.7 82 63.4
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-17 94.0 187 34.8
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-14 84.3 157 37.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-13 80.1 100 46.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 3.3e-13 80.1 100 46.0
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.3e-13 79.0 182 29.7
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-12 78.2 181 29.8
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 4.4e-10 69.7 67 58.2
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 8.3e-09 65.5 68 50.0
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.6e-07 61.2 74 43.2


User provided reference genes

Program Settings