Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g46320_MAGBIO Magnolia biondii HOM05D003163 ORTHO05D003504 6.3e-38 160.2 78 100.0
MD00G1085200 Malus domestica HOM05D003163 ORTHO05D003504 1.6e-25 119.0 67 83.6
Nn7g37200 Nelumbo nucifera HOM05D003163 ORTHO05D003504 2.1e-25 118.6 67 86.6
Nitab4.5_0000799g0070 Nicotiana tabacum HOM05D003163 ORTHO05D003504 8.0e-25 116.7 67 79.1
Nitab4.5_0005519g0050 Nicotiana tabacum HOM05D003163 ORTHO05D003504 8.0e-25 116.7 67 79.1
Peaxi162Scf01257g00028 Petunia axillaris HOM05D003163 ORTHO05D003504 1.2e-23 112.8 67 77.6
Hma1.2p1_0436F.1_g152930 Hydrangea macrophylla HOM05D003163 ORTHO05D003504 1.5e-23 112.5 69 78.3
ATR0620G099 Amborella trichopoda HOM05D003163 ORTHO05D003504 2.0e-23 112.1 69 75.4
CAN.G792.11 Capsicum annuum HOM05D003163 ORTHO05D003504 2.0e-23 112.1 69 73.9
RcHm_v2.0_Chr5g0022501 Rosa chinensis HOM05D003163 ORTHO05D003504 2.0e-23 112.1 67 76.1
Lj2A145T59 Lonicera japonica HOM05D003163 ORTHO05D003504 3.4e-23 111.3 77 68.8
TAR629G1919 Trochodendron aralioides HOM05D003163 ORTHO05D003504 4.4e-23 110.9 67 83.6
Aqoxy3G04361 Aquilegia oxysepala HOM05D003163 ORTHO05D003504 7.5e-23 110.2 67 77.6
Sopen08g004560 Solanum pennellii HOM05D003163 ORTHO05D003504 9.8e-23 109.8 67 76.1
PGSC0003DMG400005855 Solanum tuberosum HOM05D003163 ORTHO05D003504 9.8e-23 109.8 67 76.1
FvH4_3g13540 Fragaria vesca HOM05D003163 ORTHO05D003504 1.7e-22 109.0 69 72.5
FAN11G2182 Fragaria x ananassa HOM05D003163 ORTHO05D003504 1.7e-22 109.0 69 72.5
FAN16G0999 Fragaria x ananassa HOM05D003163 ORTHO05D003504 1.7e-22 109.0 69 72.5
FAN21G3217 Fragaria x ananassa HOM05D003163 ORTHO05D003504 3.7e-22 107.8 69 72.5
TWI38G1467 Tripterygium wilfordii HOM05D003163 ORTHO05D003504 8.3e-22 106.7 67 74.6
Haze_18444 Corylus avellana HOM05D003163 ORTHO05D003504 1.8e-21 105.5 67 79.1
Dinv11460 Davidia involucrata HOM05D003163 ORTHO05D003504 1.8e-21 105.5 67 73.1
GSVIVG01015902001 Vitis vinifera HOM05D003163 ORTHO05D003504 2.4e-21 105.1 66 74.2
Medtr2g062700 Medicago truncatula HOM05D003163 ORTHO05D003504 7.0e-21 103.6 67 73.1
CiPaw.16G078500 Carya illinoinensis HOM05D003163 ORTHO05D003504 9.1e-21 103.2 67 74.6
Psat1g130360 Pisum sativum HOM05D003163 ORTHO05D003504 9.1e-21 103.2 67 71.6
CDE09G1107 Ceratophyllum demersum HOM05D003163 ORTHO05D003504 1.6e-20 102.4 67 71.6
QL04p096651 Quercus lobata HOM05D003163 ORTHO05D003504 1.6e-20 102.4 67 74.6
Phvul.005G044700 Phaseolus vulgaris HOM05D003163 ORTHO05D003504 3.5e-20 101.3 69 69.6
QL05p000504 Quercus lobata HOM05D003163 ORTHO05D003504 3.5e-20 101.3 67 73.1
TPR.G3625 Trifolium pratense HOM05D003163 ORTHO05D003504 3.5e-20 101.3 67 70.1
Actinidia22245 Actinidia chinensis HOM05D003163 ORTHO05D003504 4.5e-20 100.9 67 70.1
Rhsim02G0256200 Rhododendron simsii HOM05D003163 ORTHO05D003504 4.5e-20 100.9 67 74.6
HPP92_014502 Vanilla planifolia HOM05D003163 ORTHO05D003504 5.9e-20 100.5 73 60.3
HPP92_014509 Vanilla planifolia HOM05D003163 ORTHO05D003504 5.9e-20 100.5 73 60.3
arahy.Tifrunner.gnm1.ann1.YL4ID2 Arachis hypogaea HOM05D003163 ORTHO05D003504 1.0e-19 99.8 69 66.7
arahy.Tifrunner.gnm1.ann1.NL9YDM Arachis hypogaea HOM05D003163 ORTHO05D003504 1.3e-19 99.4 69 66.7
Lsat_1_v5_gn_7_35520 Lactuca sativa HOM05D003163 ORTHO05D003504 1.3e-19 99.4 67 70.1
ClCG09G022940 Citrullus lanatus HOM05D003163 ORTHO05D003504 1.7e-19 99.0 67 64.2
VMungo1080G0527 Vigna mungo HOM05D003163 ORTHO05D003504 1.7e-19 99.0 69 66.7
Os03g0126300 Oryza sativa ssp. japonica HOM05D003163 ORTHO05D003504 2.3e-19 98.6 68 63.2
Lalb_Chr25g0283991 Lupinus albus HOM05D003163 ORTHO05D003504 2.9e-19 98.2 67 68.7
MSTRG.23228 Avicennia marina HOM05D003163 ORTHO05D003504 3.8e-19 97.8 67 62.7
MELO3C012575.2 Cucumis melo HOM05D003163 ORTHO05D003504 3.8e-19 97.8 67 64.2
CANSAT56G4187 Cannabis sativa HOM05D003163 ORTHO05D003504 5.0e-19 97.4 65 70.8
Ciclev10015801m.g Citrus clementina HOM05D003163 ORTHO05D003504 5.0e-19 97.4 67 67.2
Migut.H02555 Erythranthe guttata HOM05D003163 ORTHO05D003504 5.0e-19 97.4 67 62.7
Lj3g0022748 Lotus japonicus HOM05D003163 ORTHO05D003504 6.6e-19 97.1 67 67.2
SalBow8G5376 Salvia bowleyana HOM05D003163 ORTHO05D003504 6.6e-19 97.1 67 61.2
CsaV3_7G023200 Cucumis sativus L. HOM05D003163 ORTHO05D003504 8.6e-19 96.7 67 64.2
Glyma.08G161400 Glycine max HOM05D003163 ORTHO05D003504 1.9e-18 95.5 67 68.7
Migut.H02559 Erythranthe guttata HOM05D003163 ORTHO05D003504 2.5e-18 95.1 67 61.2
Ca_03281_v3 Cicer arietinum L. HOM05D003163 ORTHO05D003504 4.2e-18 94.4 67 65.7
Gohir.A01G189800 Gossypium hirsutum HOM05D003163 ORTHO05D003504 4.2e-18 94.4 67 67.2
Gorai.002G222800 Gossypium raimondii HOM05D003163 ORTHO05D003504 4.2e-18 94.4 67 67.2
Sc23g0006040 Simmondsia chinensis HOM05D003163 ORTHO05D003504 4.2e-18 94.4 67 68.7
DCAR_004518 Daucus carota HOM05D003163 ORTHO05D003504 5.5e-18 94.0 67 67.2
HanXRQChr03g0093531 Helianthus annuus HOM05D003163 ORTHO05D003504 9.5e-18 93.2 67 64.2
SGA_v2.0_scaffold12G06261 Striga asiatica HOM05D003163 ORTHO05D003504 9.5e-18 93.2 65 61.5
unitig_747.g21659 Utricularia gibba HOM05D003163 ORTHO05D003504 9.5e-18 93.2 68 64.7
Gohir.D01G179800 Gossypium hirsutum HOM05D003163 ORTHO05D003504 1.6e-17 92.4 67 67.2
ECA246G4422 Erigeron canadensis HOM05D002893 ORTHO05D003387 2.1e-17 92.0 67 62.7
Manes.03G070200 Manihot esculenta HOM05D003163 ORTHO05D003504 4.7e-17 90.9 67 65.7
AT5G44600 Arabidopsis thaliana HOM05D003163 ORTHO05D003504 8.0e-17 90.1 67 67.2
Eucgr.G00016 Eucalyptus grandis HOM05D003163 ORTHO05D003504 1.0e-16 89.7 68 63.2
Eucgr.G00019 Eucalyptus grandis HOM05D003163 ORTHO05D003504 1.8e-16 89.0 68 63.2
Eucgr.J03201 Eucalyptus grandis HOM05D003163 ORTHO05D003504 1.8e-16 89.0 68 63.2
SMO169G0024 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 1.8e-16 89.0 67 62.7
Atru.chr10.197 Acer truncatum HOM05D003163 ORTHO05D003504 2.3e-16 88.6 67 62.7
Eucgr.F04491 Eucalyptus grandis HOM05D003163 ORTHO05D003504 2.3e-16 88.6 68 63.2
Sed0019415 Sechium edule HOM05D003163 ORTHO05D003504 2.3e-16 88.6 61 63.9
EL10Ac4g07517 Beta vulgaris HOM05D003163 ORTHO05D003504 3.0e-16 88.2 67 61.2
AL8G15040 Arabidopsis lyrata HOM05D003163 ORTHO05D003504 4.0e-16 87.8 67 64.2
Mapoly0064s0054 Marchantia polymorpha HOM05D003163 ORTHO05D003504 5.2e-16 87.4 66 62.1
Thhalv10000954m.g Eutrema salsugineum HOM05D003163 ORTHO05D003504 8.9e-16 86.7 67 64.2
Pp3c21_7930 Physcomitrium patens HOM05D003163 ORTHO05D003504 4.4e-15 84.3 67 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1392 Anthoceros agrestis HOM05D003163 ORTHO05D003504 9.8e-15 83.2 65 58.5
BcaB03g13157 Brassica carinata HOM05D003163 ORTHO05D003504 9.8e-15 83.2 65 63.1
CARHR178350 Cardamine hirsuta HOM05D003163 ORTHO05D003504 9.8e-15 83.2 67 61.2
SMO169G0034 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 1.3e-14 82.8 67 59.7
THA.LOC104806237 Tarenaya hassleriana HOM05D003163 ORTHO05D003504 1.3e-14 82.8 67 62.7
Carub.0008s0374 Capsella rubella HOM05D003163 ORTHO05D003504 3.7e-14 81.3 67 61.2
Cc03_g01370 Coffea canephora HOM05D003163 ORTHO05D003504 3.7e-14 81.3 68 60.3
Potri.001G073000 Populus trichocarpa HOM05D003163 ORTHO05D003504 3.7e-14 81.3 67 62.7
SMO202G0034 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 3.7e-14 81.3 67 58.2
Sp2g09390 Schrenkiella parvula HOM05D003163 ORTHO05D003504 6.3e-14 80.5 67 59.7
Carub.0008s0373 Capsella rubella HOM05D003163 ORTHO05D003504 8.3e-14 80.1 67 59.7
BcaNung02578 Brassica carinata HOM05D003163 ORTHO05D003504 1.1e-13 79.7 65 61.5
A08p32400 Brassica napus HOM05D003163 ORTHO05D003504 1.1e-13 79.7 65 61.5
BraA08t35163Z Brassica rapa HOM05D003163 ORTHO05D003504 1.1e-13 79.7 65 61.5
SMO169G0078 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 1.4e-13 79.3 67 58.2
AT5G44590 Arabidopsis thaliana HOM05D003163 ORTHO05D003504 2.4e-13 78.6 67 58.2
Aa31LG9G8570 Aethionema arabicum HOM05D003163 ORTHO05D003504 3.2e-13 78.2 67 56.7
BolC8t49225H Brassica oleracea HOM05D003163 ORTHO05D003504 3.2e-13 78.2 65 60.0
AUR62035646 Chenopodium quinoa HOM05D003163 ORTHO05D003504 3.2e-13 78.2 67 56.7
AL8G15050 Arabidopsis lyrata HOM05D003163 ORTHO05D003504 4.1e-13 77.8 67 58.2
AUR62017158 Chenopodium quinoa HOM05D003163 ORTHO05D003504 7.0e-13 77.0 70 54.3
CARHR178360 Cardamine hirsuta HOM05D003163 ORTHO05D003504 9.2e-13 76.6 67 58.2
C08p16030 Brassica napus HOM05D003163 ORTHO05D003504 1.2e-12 76.3 62 62.9
MBI04_g47854_MAGBIO Magnolia biondii HOM05D003163 ORTHO05D003504 1.2e-12 76.3 36 100.0
Sp2g09400 Schrenkiella parvula HOM05D003163 ORTHO05D003504 1.6e-12 75.9 67 58.2
Cre07.g313600 Chlamydomonas reinhardtii HOM05D003163 ORTHO05D003504 3.5e-12 74.7 66 56.1
MD10G1220900 Malus domestica HOM05D003163 ORTHO05D003504 6.6e-11 70.5 46 67.4
Cre07.g314450 Chlamydomonas reinhardtii HOM05D003163 ORTHO05D003504 1.5e-10 69.3 61 55.7
PGR044G2273 Punica granatum HOM05D003163 ORTHO05D003504 1.5e-10 69.3 67 55.2
Prupe.4G123600 Prunus persica HOM05D003163 ORTHO05D003504 1.9e-10 68.9 44 70.5
Os02g0489500 Oryza sativa ssp. japonica HOM05D003163 ORTHO05D003504 5.6e-10 67.4 68 48.5
Phvul.003G203700 Phaseolus vulgaris HOM05D003163 ORTHO05D003504 1.2e-09 66.2 71 50.7
Glyma.17G085800 Glycine max HOM05D003163 ORTHO05D003504 2.1e-09 65.5 82 45.1
Psat4g059560 Pisum sativum HOM05D003163 ORTHO05D003504 3.6e-09 64.7 71 47.9
Ah.08g214170 Amaranthus hybridus HOM05D003163 ORTHO05D003504 4.7e-09 64.3 73 49.3
Eucgr.K02808 Eucalyptus grandis HOM05D003163 ORTHO05D003504 4.7e-09 64.3 71 49.3
FvH4_5g06050 Fragaria vesca HOM05D003163 ORTHO05D003504 4.7e-09 64.3 61 54.1
Lj4g0004164 Lotus japonicus HOM05D003163 ORTHO05D003504 4.7e-09 64.3 71 49.3
BolC8t49220H Brassica oleracea HOM05D016967 ORTHO05D003504 6.2e-09 63.9 65 52.3
Manes.14G061900 Manihot esculenta HOM05D003163 ORTHO05D003504 6.2e-09 63.9 62 53.2
Medtr4g105140 Medicago truncatula HOM05D003163 ORTHO05D003504 6.2e-09 63.9 71 47.9
RcHm_v2.0_Chr7g0192811 Rosa chinensis HOM05D003163 ORTHO05D003504 8.0e-09 63.5 61 54.1
VMungo1215G1835 Vigna mungo HOM05D003163 ORTHO05D003504 8.0e-09 63.5 71 47.9
CDE05G0716 Ceratophyllum demersum HOM05D000044 ORTHO05D003504 1.0e-08 63.2 69 49.3
Ca_14265_v3 Cicer arietinum L. HOM05D003163 ORTHO05D003504 1.4e-08 62.8 71 49.3
FAN04G3202 Fragaria x ananassa HOM05D001141 ORTHO05D003504 1.8e-08 62.4 61 52.5
Prupe.5G167300 Prunus persica HOM05D003163 ORTHO05D009144 2.3e-08 62.0 60 55.0
Cpa.g.sc110.14 Carica papaya HOM05D003163 ORTHO05D003504 4.0e-08 61.2 73 46.6
AUR62008159 Chenopodium quinoa HOM05D003163 ORTHO05D003504 4.0e-08 61.2 65 49.2
MD06G1167600 Malus domestica HOM05D003163 ORTHO05D003504 4.0e-08 61.2 60 55.0
CDE11G1064 Ceratophyllum demersum HOM05D003163 ORTHO05D003504 5.2e-08 60.8 65 49.2
Dinv38549 Davidia involucrata HOM05D003163 ORTHO05D003504 5.2e-08 60.8 71 47.9
SGA_v2.0_scaffold90G27859 Striga asiatica HOM05D003163 ORTHO05D003504 5.2e-08 60.8 71 46.5
TPR.G37515 Trifolium pratense HOM05D003163 ORTHO05D003504 5.2e-08 60.8 71 46.5
SMO358G0730 Selaginella moellendorffii HOM05D003163 ORTHO05D003504 6.8e-08 60.5 71 45.1
AUR62028739 Chenopodium quinoa HOM05D003163 ORTHO05D003504 8.9e-08 60.1 65 47.7
PSO832G3605 Papaver somniferum HOM05D003163 ORTHO05D003504 8.9e-08 60.1 71 46.5
MBI10_g00740_MAGBIO Magnolia biondii HOM05D003163 ORTHO05D003504 1.2e-07 59.7 71 47.9
Pp3c1_3890 Physcomitrium patens HOM05D003163 ORTHO05D003504 1.5e-07 59.3 92 40.2
Pp3c5_18300 Physcomitrium patens HOM05D003163 ORTHO05D003504 1.5e-07 59.3 51 51.0
Sed0004811 Sechium edule HOM05D003163 ORTHO05D003504 2.0e-07 58.9 71 45.1
ATR1154G020 Amborella trichopoda HOM05D003163 ORTHO05D003504 2.6e-07 58.5 61 52.5
Migut.O00141 Erythranthe guttata HOM05D003163 ORTHO05D003504 2.6e-07 58.5 61 54.1
CANSAT21G1563 Cannabis sativa HOM05D003163 ORTHO05D003504 3.4e-07 58.2 72 44.4
ECA232G2180 Erigeron canadensis HOM05D000637 ORTHO05D002686 3.4e-07 58.2 73 42.5
PGR044G2024 Punica granatum HOM05D003163 ORTHO05D003504 4.4e-07 57.8 71 46.5
SEGI_26446 Sequoiadendron giganteum HOM05D003163 ORTHO05D003504 4.4e-07 57.8 71 45.1
Cc04_g11780 Coffea canephora HOM05D003163 ORTHO05D003504 5.8e-07 57.4 71 46.5
MELO3C002291.2 Cucumis melo HOM05D003163 ORTHO05D003504 5.8e-07 57.4 60 48.3
Gohir.A08G097848 Gossypium hirsutum HOM05D003163 ORTHO05D003504 5.8e-07 57.4 60 50.0
THA.LOC104798967 Tarenaya hassleriana HOM05D003163 ORTHO05D003504 5.8e-07 57.4 71 46.5
TAR374G0422 Trochodendron aralioides HOM05D003163 ORTHO05D003504 5.8e-07 57.4 71 46.5
Ah.02g110700 Amaranthus hybridus HOM05D003163 ORTHO05D003504 7.5e-07 57.0 65 49.2
Potri.015G082432 Populus trichocarpa HOM05D003163 ORTHO05D003504 7.5e-07 57.0 71 46.5
Sabra15G0105900 Salix brachista HOM05D003163 ORTHO05D003504 7.5e-07 57.0 71 46.5
ClCG01G013410 Citrullus lanatus HOM05D003163 ORTHO05D003504 9.8e-07 56.6 60 48.3
CsaV3_1G008760 Cucumis sativus L. HOM05D003163 ORTHO05D003504 9.8e-07 56.6 60 48.3
Thhalv10005653m.g Eutrema salsugineum HOM05D003163 ORTHO05D003504 9.8e-07 56.6 65 44.6
PSO384G3827 Papaver somniferum HOM05D003163 ORTHO05D003504 9.8e-07 56.6 71 46.5
CSS0002386 Camellia sinensis var. sinensis HOM05D003163 ORTHO05D003504 1.3e-06 56.2 71 43.7
CSS0045781 Camellia sinensis var. sinensis HOM05D003163 ORTHO05D003504 1.3e-06 56.2 71 43.7
CiPaw.11G021900 Carya illinoinensis HOM05D003163 ORTHO05D003504 1.3e-06 56.2 61 50.8
Gohir.D08G107900 Gossypium hirsutum HOM05D003163 ORTHO05D003504 1.3e-06 56.2 60 50.0
Gorai.004G115500 Gossypium raimondii HOM05D003163 ORTHO05D003504 1.3e-06 56.2 60 50.0
Lj9P444T58 Lonicera japonica HOM05D003163 ORTHO05D003504 1.3e-06 56.2 71 43.7
Nn4g22643 Nelumbo nucifera HOM05D003163 ORTHO05D003504 1.3e-06 56.2 71 45.1
Pp3c1_890 Physcomitrium patens HOM05D003163 ORTHO05D003504 1.3e-06 56.2 44 59.1
Thecc.03G021400 Theobroma cacao HOM05D003163 ORTHO05D003504 1.3e-06 56.2 60 46.7
GSVIVG01007672001 Vitis vinifera HOM05D003163 ORTHO05D003504 1.3e-06 56.2 71 43.7
BcaNung02574 Brassica carinata HOM05D003163 ORTHO05D013480 1.7e-06 55.8 52 53.8
COL.COLO4_30161 Corchorus olitorius HOM05D003163 ORTHO05D003504 1.7e-06 55.8 71 42.3
Lalb_Chr07g0182921 Lupinus albus HOM05D003163 ORTHO05D003504 1.7e-06 55.8 71 42.3
Mapoly0036s0150 Marchantia polymorpha HOM05D003163 ORTHO05D003504 1.7e-06 55.8 47 55.3
Sabra01G0051500 Salix brachista HOM05D003163 ORTHO05D003504 1.7e-06 55.8 91 41.8
MSTRG.14629 Avicennia marina HOM05D003163 ORTHO05D003504 2.2e-06 55.5 71 47.9
Lsat_1_v5_gn_4_77041 Lactuca sativa HOM05D003163 ORTHO05D003504 2.2e-06 55.5 62 48.4
Oeu023449.1 Olea europaea HOM05D003163 ORTHO05D003504 2.2e-06 55.5 71 42.3
Thecc.05G118200 Theobroma cacao HOM05D003163 ORTHO05D003504 2.2e-06 55.5 44 59.1
CARHR276940 Cardamine hirsuta HOM05D003163 ORTHO05D003504 2.9e-06 55.1 71 43.7
AT5G63100 Arabidopsis thaliana HOM05D003163 ORTHO05D003504 4.9e-06 54.3 71 42.3
CAN.G993.27 Capsicum annuum HOM05D003163 ORTHO05D003504 4.9e-06 54.3 65 41.5
DCAR_021578 Daucus carota HOM05D003163 ORTHO05D003504 4.9e-06 54.3 65 41.5
QL10p007898 Quercus lobata HOM05D003163 ORTHO05D003504 4.9e-06 54.3 60 48.3
Atru.chr9.2554 Acer truncatum HOM05D003163 ORTHO05D003504 6.4e-06 53.9 71 45.1
AL8G40160 Arabidopsis lyrata HOM05D003163 ORTHO05D003504 6.4e-06 53.9 71 42.3
AagrBONN_evm.TU.Sc2ySwM_117.24 Anthoceros agrestis HOM05D003163 ORTHO05D003504 8.3e-06 53.5 47 51.1
Cpa.g.sc30.51 Carica papaya HOM05D003163 ORTHO05D003504 8.3e-06 53.5 46 60.9
Solyc06g071670.1 Solanum lycopersicum HOM05D003163 ORTHO05D003504 8.3e-06 53.5 65 43.1
Sopen06g027980 Solanum pennellii HOM05D003163 ORTHO05D003504 8.3e-06 53.5 65 43.1
PGSC0003DMG400026990 Solanum tuberosum HOM05D003163 ORTHO05D003504 8.3e-06 53.5 65 43.1


User provided reference genes

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