Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.5e-224 781.9 439 100.0
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.5e-101 372.9 403 66.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 3.4e-56 223.4 423 40.7
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 9.3e-54 215.3 423 45.4
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 8.1e-50 202.2 439 36.9
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.3e-43 180.3 398 38.7
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 2.1e-42 177.6 435 37.0
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 2.8e-42 177.2 461 39.3
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 8.2e-42 175.6 435 36.8
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.1e-41 175.3 434 38.9
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.1e-41 175.3 434 38.9
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 4.1e-41 173.3 430 41.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 5.3e-41 172.9 452 35.4
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.3e-39 168.3 302 39.1
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.8e-39 166.8 234 45.3
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 6.5e-39 166.0 420 34.3
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.3e-36 158.3 422 37.9
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.9e-36 156.8 376 36.7
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.1e-36 156.4 422 35.3
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 6.7e-36 156.0 292 39.0
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.7e-36 155.6 377 36.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.5e-35 154.8 417 33.8
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.9e-35 154.5 387 37.2
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.5e-35 154.1 419 32.9
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.7e-35 152.9 259 42.1
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 5.7e-35 152.9 345 37.4
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 1.3e-34 151.8 378 35.7
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.8e-34 150.6 372 36.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 4.8e-34 149.8 378 36.2
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 4.8e-34 149.8 371 36.1
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 6.3e-34 149.4 464 37.1
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 1.1e-33 148.7 394 35.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.8e-33 147.9 421 34.9
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 3.1e-33 147.1 414 33.8
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 3.1e-33 147.1 390 35.6
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 6.9e-33 146.0 228 44.7
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.5e-32 144.8 393 35.4
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.0e-32 144.4 390 35.1
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.6e-32 144.1 398 33.7
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.6e-32 144.1 379 34.8
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 7.7e-32 142.5 429 32.4
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.3e-31 141.7 415 33.7
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.7e-31 141.4 461 33.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 2.9e-31 140.6 361 35.5
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.8e-31 140.2 412 32.5
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.0e-31 139.8 409 38.1
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 5.0e-31 139.8 431 32.7
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.5e-31 139.4 226 43.4
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 8.5e-31 139.0 437 35.2
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.5e-30 137.5 409 36.4
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 5.5e-30 136.3 442 33.3
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.4e-30 135.6 86 82.6
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 1.2e-29 135.2 233 41.6
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 3.6e-29 133.7 382 35.3
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.6e-29 133.3 257 39.3
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 7.9e-29 132.5 411 31.4
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.4e-28 131.7 222 43.7
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 1.4e-28 131.7 272 44.9
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.0e-28 130.6 231 39.4
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 3.0e-28 130.6 425 33.2
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 6.7e-28 129.4 230 42.6
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 8.8e-28 129.0 438 34.2
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 8.8e-28 129.0 335 34.3
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.5e-27 128.3 392 32.7
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.5e-27 128.3 232 40.5
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 1.5e-27 128.3 282 37.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.5e-27 128.3 393 31.3
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.3e-27 126.7 443 30.2
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 4.3e-27 126.7 425 31.3
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 4.3e-27 126.7 375 34.1
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 5.7e-27 126.3 445 31.2
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 7.4e-27 125.9 384 33.1
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 9.7e-27 125.6 223 38.1
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.3e-26 125.2 189 46.6
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 2.2e-26 124.4 367 32.4
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 3.7e-26 123.6 385 35.6
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.8e-26 123.2 442 30.3
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 1.1e-25 122.1 422 32.2
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.4e-25 121.7 305 33.8
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 2.4e-25 120.9 212 40.6
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.4e-25 120.9 456 28.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 4.1e-25 120.2 433 31.4
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 3.4e-24 117.1 215 39.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 3.4e-24 117.1 378 31.2
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 3.4e-24 117.1 208 40.4
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 3.4e-24 117.1 383 30.3
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 4.5e-24 116.7 209 40.7
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 4.5e-24 116.7 227 40.5
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 4.5e-24 116.7 227 40.5
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 5.9e-24 116.3 428 30.1
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 7.7e-24 115.9 185 44.9
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.0e-23 115.5 393 31.3
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 1.7e-23 114.8 189 42.3
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.7e-23 114.8 368 31.8
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 2.9e-23 114.0 226 40.3
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.9e-23 114.0 222 38.3
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 3.8e-23 113.6 225 39.6
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 3.8e-23 113.6 185 44.3
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 3.8e-23 113.6 185 44.3
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 3.8e-23 113.6 185 44.3
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 3.8e-23 113.6 222 39.2
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 5.0e-23 113.2 186 41.9
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 6.5e-23 112.8 256 45.7
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.5e-23 112.8 188 43.1
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 8.5e-23 112.5 365 31.2
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 1.1e-22 112.1 182 44.0
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.4e-22 111.7 386 32.1
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 1.9e-22 111.3 409 29.6
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 2.5e-22 110.9 193 42.5
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.5e-22 110.9 229 34.1
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 3.2e-22 110.5 454 30.0
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 7.2e-22 109.4 180 43.9
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 7.2e-22 109.4 180 43.9
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.2e-21 108.6 283 39.9
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 3.6e-21 107.1 183 42.1
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 4.7e-21 106.7 180 42.8
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 7.9e-21 105.9 457 34.6
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 5.1e-20 103.2 182 41.2
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 5.1e-20 103.2 187 40.1
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-19 102.1 389 30.3
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 2.2e-18 97.8 272 31.6
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 4.8e-18 96.7 124 50.8
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.1e-17 93.6 124 42.7
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.0e-16 91.3 368 31.5
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 2.6e-16 90.9 285 33.3
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.7e-16 89.4 99 66.7
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.3e-15 88.6 333 28.5
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.8e-15 87.0 82 54.9
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.9e-14 84.7 102 44.1
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.6e-13 81.6 336 29.2
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 2.7e-13 80.9 125 42.4
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 4.7e-13 80.1 59 61.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.1e-13 79.7 252 35.3
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.0e-12 79.0 121 43.8
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 7.5e-11 72.8 236 31.8
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.1e-09 68.9 246 31.7
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 1.6e-08 65.1 96 40.6
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.5e-08 63.5 252 32.5
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 1.1e-06 58.9 62 50.0


User provided reference genes

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