Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 8.9e-78 293.5 146 100.0
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 2.8e-55 218.8 123 83.7
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 8.1e-55 217.2 130 77.7
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 3.4e-53 211.8 123 80.5
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 4.5e-53 211.5 123 81.3
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 4.5e-53 211.5 123 81.3
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 4.5e-53 211.5 123 81.3
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 9.9e-53 210.3 122 78.7
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 1.7e-52 209.5 123 80.5
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 1.7e-52 209.5 123 79.7
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 2.9e-52 208.8 123 80.5
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 3.8e-52 208.4 123 81.3
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 3.8e-52 208.4 123 78.0
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 3.8e-52 208.4 123 79.7
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 4.9e-52 208.0 123 78.9
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 4.9e-52 208.0 123 78.9
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 4.9e-52 208.0 123 78.9
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 4.9e-52 208.0 125 77.6
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 4.9e-52 208.0 123 79.7
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 6.4e-52 207.6 122 82.0
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 8.4e-52 207.2 123 79.7
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 1.9e-51 206.1 123 78.9
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 1.9e-51 206.1 125 77.6
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 2.4e-51 205.7 123 78.0
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 3.2e-51 205.3 123 75.6
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 4.2e-51 204.9 123 78.9
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 4.2e-51 204.9 123 78.0
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 5.5e-51 204.5 123 78.9
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 5.5e-51 204.5 122 78.7
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 7.1e-51 204.1 123 79.7
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 7.1e-51 204.1 125 76.0
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 9.3e-51 203.8 167 60.5
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.2e-50 203.4 123 76.4
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 1.2e-50 203.4 123 78.9
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 1.2e-50 203.4 125 75.2
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 1.2e-50 203.4 125 75.2
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.2e-50 203.4 123 77.2
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 1.6e-50 203.0 123 79.7
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 1.6e-50 203.0 123 79.7
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 1.6e-50 203.0 123 78.0
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.7e-50 202.2 123 77.2
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 2.7e-50 202.2 119 79.8
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 2.7e-50 202.2 123 77.2
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 2.7e-50 202.2 123 78.0
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 4.6e-50 201.4 123 78.9
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 4.6e-50 201.4 123 76.4
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 6.0e-50 201.1 123 76.4
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 7.9e-50 200.7 123 74.8
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 1.3e-49 199.9 123 74.8
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.3e-49 199.9 123 76.4
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 1.3e-49 199.9 123 77.2
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 1.8e-49 199.5 123 75.6
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 2.3e-49 199.1 123 74.0
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 3.0e-49 198.7 123 74.8
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 3.0e-49 198.7 123 74.8
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 3.9e-49 198.4 123 75.6
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 5.1e-49 198.0 122 76.2
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 5.1e-49 198.0 122 76.2
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 6.7e-49 197.6 123 75.6
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 8.7e-49 197.2 123 74.8
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 8.7e-49 197.2 125 76.8
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 1.1e-48 196.8 123 77.2
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 1.5e-48 196.4 123 74.8
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 3.3e-48 195.3 123 74.8
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 5.6e-48 194.5 123 74.8
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 7.4e-48 194.1 123 74.0
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 7.4e-48 194.1 123 75.6
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.3e-47 193.4 123 74.8
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 2.1e-47 192.6 123 73.2
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 2.8e-47 192.2 123 74.0
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 2.8e-47 192.2 123 74.0
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 2.8e-47 192.2 123 74.0
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 2.8e-47 192.2 123 74.0
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 2.8e-47 192.2 123 74.0
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 3.7e-47 191.8 120 75.8
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 3.7e-47 191.8 123 73.2
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.7e-47 191.8 123 70.7
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 4.8e-47 191.4 123 73.2
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 8.2e-47 190.7 123 69.9
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 8.2e-47 190.7 123 74.0
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 8.2e-47 190.7 123 70.7
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 1.1e-46 190.3 122 70.5
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.1e-46 190.3 122 70.5
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 1.4e-46 189.9 123 71.5
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 2.4e-46 189.1 123 73.2
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 2.4e-46 189.1 122 69.7
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 3.1e-46 188.7 123 72.4
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 4.0e-46 188.3 123 70.7
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 6.9e-46 187.6 123 71.5
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 6.9e-46 187.6 123 69.1
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.2e-45 186.8 123 69.1
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.2e-45 186.8 123 69.1
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 1.5e-45 186.4 123 70.7
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.7e-44 183.0 114 72.8
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.7e-44 183.0 123 70.7
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 3.8e-44 181.8 120 72.5
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 8.4e-44 180.6 121 70.2
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 1.5e-40 169.9 123 69.1
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 1.3e-39 166.8 123 63.4
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 8.2e-39 164.1 123 64.2
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.4e-38 162.5 123 63.4
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 6.9e-38 161.0 123 63.4
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 5.9e-37 157.9 123 61.8
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 2.9e-36 155.6 112 67.0
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 3.8e-36 155.2 112 65.2
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 5.0e-36 154.8 112 64.3
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 8.5e-36 154.1 111 63.1
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 5.5e-35 151.4 111 61.3
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 5.5e-35 151.4 111 61.3
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 5.5e-35 151.4 111 61.3
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 4.6e-34 148.3 113 60.2
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 4.6e-34 148.3 113 60.2
CARHR210350 Cardamine hirsuta HOM05D004338 ORTHO05D005205 8.8e-33 144.1 109 62.4
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 1.9e-32 142.9 211 42.7
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.4e-30 136.7 90 67.8
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.4e-30 136.0 86 76.7
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 5.9e-29 131.3 61 98.4
Actinidia04492 Actinidia chinensis HOM05D004338 ORTHO05D005205 7.7e-29 131.0 77 79.2
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 1.0e-25 120.6 121 47.9
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 5.1e-25 118.2 76 76.3
Nn1g02553 Nelumbo nucifera HOM05D004338 ORTHO05D005205 6.7e-25 117.9 101 61.4
Nn1g00039 Nelumbo nucifera HOM05D004338 ORTHO05D005205 8.8e-25 117.5 57 93.0
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 2.6e-24 115.9 121 45.5
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 4.4e-24 115.2 123 48.8
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 2.2e-23 112.8 123 46.3
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 2.4e-22 109.4 104 51.9
CSS0020548 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 8.5e-20 100.9 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 7.2e-19 97.8 119 38.7
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 1.2e-18 97.1 63 71.4
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 7.4e-16 87.8 78 57.7
SEGI_27587 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 9.1e-14 80.9 61 57.4
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 4.5e-13 78.6 123 39.0
Nn1g02552 Nelumbo nucifera HOM05D004338 ORTHO05D005205 2.7e-10 69.3 48 64.6
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 1.8e-09 66.6 35 82.9
CSS0018059 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 4.0e-09 65.5 35 85.7
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 5.2e-09 65.1 35 82.9
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 3.3e-08 62.4 34 85.3
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.3e-07 60.5 35 74.3
CBR_g39046 Chara braunii HOM05D002530 ORTHO05D002802 2.8e-07 59.3 70 37.1


User provided reference genes

Program Settings