Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.6e-298 1028.1 563 100.0
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.7e-116 424.1 488 55.3
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.7e-113 414.1 482 59.8
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.8e-102 377.5 403 66.5
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.5e-100 369.0 435 52.0
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 6.2e-95 352.4 510 50.4
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 5.3e-86 322.8 474 47.3
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 7.7e-85 318.9 486 46.3
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 5.0e-84 316.2 486 45.9
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 8.5e-84 315.5 492 47.0
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 8.5e-84 315.5 492 47.0
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.1e-83 315.1 480 49.4
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 4.6e-82 309.7 498 47.8
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.8e-81 307.8 466 46.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.3e-79 301.6 513 42.9
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 2.2e-79 300.8 496 48.8
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.9e-76 290.4 383 49.1
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 3.8e-76 290.0 462 44.8
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 1.1e-75 288.5 482 46.3
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.1e-75 288.5 491 43.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.4e-75 288.1 493 43.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 4.7e-74 283.1 514 41.4
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 6.1e-74 282.7 502 42.8
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.3e-73 280.8 469 46.9
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 8.8e-73 278.9 469 45.4
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 5.7e-72 276.2 476 46.6
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 1.3e-71 275.0 468 42.9
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.2e-71 274.2 479 42.6
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 1.1e-70 271.9 484 44.0
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 3.1e-70 270.4 481 41.8
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 7.0e-70 269.2 469 42.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.2e-69 268.5 451 45.9
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 1.2e-69 268.5 479 44.5
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 4.5e-69 266.5 464 44.2
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 2.9e-68 263.8 494 41.9
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.8e-68 263.5 493 41.2
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.0e-68 263.1 493 42.6
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.5e-67 261.5 488 40.6
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.1e-66 257.7 379 47.2
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 4.7e-66 256.5 493 41.4
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.3e-65 254.2 482 39.8
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.5e-64 251.5 370 47.0
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 7.4e-64 249.2 484 43.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 2.2e-63 247.7 444 42.6
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 8.2e-63 245.7 507 40.4
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 2.4e-62 244.2 495 38.2
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.1e-62 243.4 468 42.1
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.6e-61 240.7 497 39.8
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 4.5e-61 240.0 400 43.2
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 5.9e-61 239.6 366 44.5
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.9e-61 239.6 469 41.2
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 7.7e-61 239.2 493 43.0
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.3e-60 238.4 493 39.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.7e-60 238.0 442 41.4
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 9.4e-59 232.3 456 42.5
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 9.4e-59 232.3 493 39.1
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 2.1e-58 231.1 366 44.3
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 2.1e-58 231.1 473 40.0
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.7e-58 230.7 444 39.2
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 3.6e-58 230.3 480 40.6
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 8.0e-58 229.2 536 35.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.0e-57 228.8 472 38.3
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.8e-57 228.0 505 36.2
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 2.3e-57 227.6 458 38.9
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.0e-57 226.9 373 42.6
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.2e-56 225.3 481 37.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 5.7e-56 223.0 468 38.9
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 1.3e-55 221.9 419 39.6
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 1.1e-54 218.8 522 36.8
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.8e-54 218.0 481 37.6
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 2.4e-54 217.6 503 40.0
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 3.1e-54 217.2 443 39.1
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.4e-54 216.5 429 40.8
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.7e-53 212.6 443 37.2
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.9e-52 210.7 490 41.2
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.8e-52 210.3 486 40.9
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-51 208.8 505 37.4
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.5e-51 208.4 480 38.3
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.9e-51 208.0 460 39.1
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.2e-51 207.2 365 46.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 1.6e-50 204.9 494 40.1
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 6.1e-50 203.0 496 40.5
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 2.3e-49 201.1 494 33.8
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 4.0e-49 200.3 390 37.7
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 6.8e-49 199.5 455 36.7
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 3.4e-48 197.2 479 37.8
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 5.7e-48 196.4 449 37.6
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 7.5e-48 196.1 513 36.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.3e-47 195.3 268 50.4
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 5.4e-46 189.9 403 38.0
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 5.4e-46 189.9 403 38.0
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 9.1e-46 189.1 509 36.0
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.1e-46 189.1 484 38.0
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 1.3e-44 185.3 496 33.3
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.7e-44 184.9 293 47.4
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 1.1e-43 182.2 342 41.5
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 5.6e-43 179.9 502 37.6
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 9.5e-43 179.1 480 39.0
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 2.1e-42 177.9 370 39.2
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 5.2e-41 173.3 299 42.8
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 8.9e-41 172.6 442 39.6
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 3.4e-40 170.6 470 38.9
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 5.7e-40 169.9 417 36.5
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 9.8e-40 169.1 477 32.9
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.7e-39 168.3 384 36.2
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 6.4e-39 166.4 384 36.5
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 1.1e-38 165.6 429 40.8
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 2.4e-38 164.5 477 36.9
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 5.4e-38 163.3 384 37.0
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.2e-37 162.2 295 40.7
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 2.0e-37 161.4 482 38.4
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 3.5e-37 160.6 441 38.8
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 7.8e-37 159.5 258 43.8
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 1.3e-36 158.7 365 35.9
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 5.0e-36 156.8 476 37.2
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 6.6e-36 156.4 366 35.5
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 8.6e-36 156.0 427 39.8
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 3.3e-35 154.1 426 39.2
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 3.3e-35 154.1 429 36.1
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 5.6e-35 153.3 473 31.5
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 9.5e-35 152.5 363 34.4
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 2.8e-34 151.0 477 35.8
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 3.6e-34 150.6 475 36.8
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.6e-32 144.4 183 53.0
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.3e-31 142.1 136 55.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.7e-28 131.7 490 29.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 3.9e-28 130.6 543 30.0
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 5.0e-28 130.2 517 32.1
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 4.3e-27 127.1 171 46.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.5e-24 118.6 494 33.6
MBI04_g34435_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 2.9e-23 114.4 96 70.8
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 1.1e-22 112.5 267 36.7
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.7e-21 107.8 240 42.9
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 7.3e-19 99.8 129 49.6
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.4e-16 90.5 94 51.1
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 1.1e-14 85.9 145 38.6
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 1.2e-13 82.4 58 69.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 6.0e-13 80.1 66 54.5
unitig_62.g23880 Utricularia gibba HOM05D001846 ORTHO05D005785 2.1e-10 71.6 151 39.7
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.4e-09 68.2 166 34.3
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.4e-06 58.9 125 39.2
Nn2g13771 Nelumbo nucifera HOM05D067471 ORTHO05D005785 4.2e-06 57.4 72 50.0
Nn8g40577 Nelumbo nucifera HOM05D067471 ORTHO05D005785 4.2e-06 57.4 72 50.0
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.2e-06 57.4 69 44.9


User provided reference genes

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