Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.1e-49 197.2 102 100.0
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.0e-48 194.9 102 99.0
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 4.5e-20 101.3 87 58.6
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 7.8e-20 100.5 86 59.3
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.3e-19 99.8 80 57.5
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 3.8e-19 98.2 93 52.7
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 6.6e-19 97.4 95 54.7
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 7.3e-18 94.0 73 58.9
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 1.2e-17 93.2 95 50.5
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.2e-17 93.2 80 55.0
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.6e-17 92.8 92 51.1
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.8e-17 92.0 92 50.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 8.0e-17 90.5 92 50.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 8.0e-17 90.5 92 50.0
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.0e-16 90.1 101 50.5
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.0e-16 90.1 95 48.4
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 2.3e-16 89.0 81 53.1
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 2.3e-16 89.0 95 52.6
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 3.0e-16 88.6 96 53.1
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 3.0e-16 88.6 96 53.1
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 3.0e-16 88.6 95 47.4
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 4.0e-16 88.2 96 53.1
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 4.0e-16 88.2 77 55.8
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 4.0e-16 88.2 81 53.1
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 5.2e-16 87.8 96 50.0
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 5.2e-16 87.8 102 50.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 6.8e-16 87.4 99 47.5
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 6.8e-16 87.4 96 53.1
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 6.8e-16 87.4 76 55.3
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 8.9e-16 87.0 88 54.5
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.2e-15 86.7 92 47.8
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.5e-15 86.3 104 50.0
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.5e-15 86.3 91 50.5
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 2.6e-15 85.5 96 52.1
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.6e-15 85.5 88 53.4
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.6e-15 85.5 73 56.2
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 7.5e-15 84.0 86 47.7
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 9.8e-15 83.6 95 49.5
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.3e-14 83.2 96 50.0
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.7e-14 82.8 69 58.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 2.2e-14 82.4 99 51.5
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 2.9e-14 82.0 91 47.3
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.9e-14 82.0 87 48.3
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 8.3e-14 80.5 95 47.4
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.4e-13 79.7 97 46.4
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 3.2e-13 78.6 91 47.3
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 4.1e-13 78.2 81 50.6
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 9.2e-13 77.0 88 47.7
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.6e-12 76.3 100 45.0
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 2.7e-12 75.5 89 44.9
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 7.8e-12 73.9 98 43.9
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.7e-11 72.8 84 46.4
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.3e-11 72.4 86 43.0
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.3e-11 72.4 86 43.0
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 2.3e-11 72.4 95 42.1
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.3e-11 72.4 96 46.9
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 3.0e-11 72.0 95 43.2
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.0e-11 72.0 96 43.8
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 3.9e-11 71.6 95 44.2
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 5.0e-11 71.2 92 43.5
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 6.6e-11 70.9 88 43.2
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 6.6e-11 70.9 88 40.9
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 6.6e-11 70.9 95 44.2
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 8.6e-11 70.5 83 47.0
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 8.6e-11 70.5 80 45.0
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.1e-10 70.1 91 44.0
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.5e-10 69.7 72 51.4
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.5e-10 69.7 95 43.2
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.5e-10 69.7 79 45.6
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.9e-10 69.3 87 41.4
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.5e-10 68.9 88 44.3
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 3.3e-10 68.6 93 45.2
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.3e-10 68.6 88 40.9
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 4.3e-10 68.2 88 43.2
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 5.6e-10 67.8 79 44.3
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 5.6e-10 67.8 79 44.3
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 2.1e-09 65.9 70 48.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.1e-09 65.9 97 45.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.2e-09 64.3 88 40.9
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 1.1e-08 63.5 101 38.6
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 5.2e-08 61.2 92 39.1
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 4.4e-07 58.2 96 39.6
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 2.9e-06 55.5 101 35.6


User provided reference genes

Program Settings