Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.5e-209 731.9 370 100.0
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.1e-159 567.0 290 99.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.6e-121 439.5 279 78.9
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.1e-113 414.1 286 74.1
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 8.2e-112 407.9 264 78.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 5.3e-111 405.2 289 72.7
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 5.3e-111 405.2 287 71.4
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 9.1e-111 404.4 288 69.4
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.3e-109 400.6 281 71.9
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.3e-109 400.6 281 71.5
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.9e-109 399.4 284 73.2
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 8.5e-109 397.9 303 66.7
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.1e-108 397.5 287 69.7
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.8e-106 390.2 291 69.1
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.3e-106 389.8 281 71.2
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.3e-106 389.8 287 70.4
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 4.0e-106 389.0 288 69.8
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.0e-106 389.0 288 69.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 6.8e-106 388.3 286 70.3
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 8.8e-106 387.9 286 70.3
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.6e-105 386.3 291 68.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.7e-105 385.2 286 69.2
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 7.5e-105 384.8 294 67.7
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 6.3e-104 381.7 254 76.4
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 8.3e-104 381.3 289 68.2
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.1e-103 380.9 311 65.0
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 1.4e-103 380.6 287 67.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.4e-103 379.8 286 68.5
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 5.4e-103 378.6 289 67.1
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 5.4e-103 378.6 286 66.4
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.2e-102 377.5 283 68.2
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.2e-102 377.5 295 66.4
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.5e-102 375.9 272 69.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.5e-102 375.9 282 65.6
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 5.9e-102 375.2 282 68.1
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.0e-101 374.4 285 68.4
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.7e-101 373.6 293 66.2
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 6.5e-101 371.7 283 67.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 6.5e-101 371.7 246 75.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.1e-100 370.9 284 67.3
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.5e-100 370.5 323 60.7
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.5e-100 370.5 283 67.1
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.5e-100 370.5 285 65.6
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.2e-100 369.0 281 66.2
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.6e-99 367.1 279 65.2
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.1e-99 366.7 253 71.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 2.7e-99 366.3 287 66.9
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.6e-99 365.9 284 66.5
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 8.8e-98 361.3 215 81.9
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.7e-96 357.1 294 61.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.2e-96 356.7 284 64.1
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.2e-96 356.7 283 64.3
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.7e-96 355.9 284 61.6
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 1.1e-95 354.4 283 64.7
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.4e-95 353.2 284 63.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.1e-95 352.4 271 64.2
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 4.1e-95 352.4 250 68.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 5.4e-95 352.1 282 63.5
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.1e-95 351.3 290 63.4
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 4.5e-94 349.0 288 61.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 4.5e-94 349.0 279 64.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.9e-94 348.6 245 71.0
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 7.7e-94 348.2 283 64.0
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.7e-93 347.1 284 65.1
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 2.3e-93 346.7 284 62.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 2.9e-93 346.3 283 62.9
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 3.8e-93 345.9 283 62.5
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 5.0e-93 345.5 231 72.7
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.1e-92 344.4 286 62.2
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.5e-92 344.0 262 67.6
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.9e-92 343.6 287 62.4
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 7.2e-92 341.7 286 62.9
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.6e-91 340.5 282 63.5
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 6.1e-91 338.6 343 55.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 8.0e-91 338.2 280 62.9
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.0e-91 338.2 248 70.6
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.0e-90 335.9 221 71.0
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 5.2e-90 335.5 286 61.2
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.2e-89 334.3 283 64.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.5e-89 334.0 221 71.0
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 7.5e-89 331.6 239 68.6
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.7e-88 330.5 241 68.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.7e-88 329.3 275 61.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 4.9e-88 328.9 218 72.5
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.9e-88 328.9 243 65.8
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 8.3e-88 328.2 222 70.3
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.3e-88 328.2 331 54.1
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.4e-87 326.6 256 68.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 9.2e-87 324.7 233 67.8
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.6e-86 323.9 285 57.2
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 3.5e-86 322.8 311 56.9
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 3.5e-86 322.8 283 62.5
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.5e-86 322.8 340 52.1
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 4.6e-86 322.4 225 69.8
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.0e-85 321.2 243 64.6
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.3e-85 320.9 247 65.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 2.3e-85 320.1 309 55.7
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.3e-84 315.8 229 69.0
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.8e-81 305.4 247 62.3
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.7e-80 303.9 289 59.2
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 3.7e-80 302.8 217 71.0
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 4.1e-79 299.3 249 61.4
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 4.1e-79 299.3 249 61.4
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.6e-78 297.4 249 61.0
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.6e-78 297.4 249 61.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.6e-78 295.8 169 83.4
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.3e-77 293.5 188 75.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.4e-71 274.2 204 67.6
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.1e-70 270.4 166 78.3
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.6e-67 260.8 249 58.2
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 3.2e-63 246.5 282 50.4
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.2e-57 228.0 272 46.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 3.4e-57 226.5 141 75.2
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 5.8e-57 225.7 242 47.9
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.6e-54 217.6 224 49.6
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 6.0e-54 215.7 208 50.0
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 6.6e-53 212.2 133 77.4
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.8e-50 204.1 258 48.8
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 9.3e-47 191.8 198 48.0
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.5e-44 184.5 152 62.5
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 4.3e-44 183.0 120 76.7
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 6.9e-42 175.6 95 83.2
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 9.3e-39 165.2 131 65.6
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.0e-25 120.9 180 33.3
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 5.0e-24 116.3 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 4.2e-23 113.2 80 63.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 4.2e-23 113.2 235 34.9
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.8e-21 107.8 81 59.3
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.8e-19 100.5 117 47.9
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.7e-19 100.1 129 48.1
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 8.2e-19 99.0 83 61.4
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-18 98.6 83 62.7
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 9.0e-18 95.5 70 60.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 9.7e-12 75.5 47 74.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 6.9e-10 69.3 123 35.8
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 9.4e-07 58.9 52 63.5
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 2.7e-06 57.4 52 46.2


User provided reference genes

Program Settings