Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.2e-223 779.6 410 100.0
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.5e-133 479.6 412 66.5
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.0e-131 474.2 374 68.2
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.7e-129 466.8 365 68.2
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.5e-127 460.3 415 62.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 7.7e-127 458.0 358 67.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.2e-126 456.4 418 61.5
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 6.5e-126 454.9 370 66.8
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 3.6e-124 449.1 368 66.3
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 6.1e-124 448.4 365 66.0
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.0e-123 447.6 408 61.0
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.4e-123 447.2 430 60.0
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 2.3e-123 446.4 429 60.8
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.8e-120 436.8 352 65.3
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 3.5e-119 432.6 348 66.4
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-118 429.9 361 64.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.9e-118 429.5 361 64.0
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 2.5e-117 426.4 347 63.4
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 3.2e-117 426.0 345 65.2
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.7e-116 422.9 361 62.9
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 2.7e-116 422.9 435 57.0
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.4e-115 420.6 353 63.2
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.3e-115 419.9 411 59.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.3e-115 419.9 342 64.6
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 5.2e-115 418.7 374 61.8
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 8.8e-115 417.9 414 57.7
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.2e-114 417.5 353 63.7
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.0e-114 416.8 355 62.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 4.4e-114 415.6 369 61.2
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 5.7e-114 415.2 370 62.4
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 7.5e-114 414.8 356 62.6
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.7e-113 413.7 374 61.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-113 413.7 364 63.2
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 2.8e-113 412.9 423 57.4
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 2.8e-113 412.9 365 62.5
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.1e-112 411.0 341 64.5
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.1e-112 411.0 423 57.2
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.4e-112 410.6 427 55.0
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 3.1e-112 409.5 356 62.1
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 3.1e-112 409.5 335 65.7
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 7.0e-112 408.3 381 60.1
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.0e-112 408.3 387 58.7
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 9.1e-112 407.9 398 58.3
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 2.0e-111 406.8 352 60.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.0e-111 406.8 359 61.3
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 4.5e-111 405.6 351 62.4
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.7e-110 403.7 382 59.9
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 2.9e-110 402.9 356 61.5
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 5.0e-110 402.1 357 60.8
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.9e-109 400.2 339 63.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.2e-109 399.4 438 54.1
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.2e-109 399.1 352 61.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 5.5e-109 398.7 387 60.2
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 7.2e-109 398.3 351 60.7
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 7.2e-109 398.3 358 62.3
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 9.4e-109 397.9 360 59.7
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 2.1e-108 396.7 413 56.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 2.7e-108 396.4 353 61.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 6.1e-108 395.2 424 55.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.4e-107 394.0 360 58.9
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.4e-107 394.0 356 61.2
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.4e-107 394.0 355 59.7
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 4.0e-107 392.5 435 54.3
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 8.8e-107 391.3 362 59.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 8.8e-107 391.3 425 54.8
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.5e-106 390.6 354 61.0
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.3e-105 387.5 352 59.4
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.7e-105 387.1 352 59.1
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 2.2e-105 386.7 320 65.0
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.2e-105 386.7 438 53.7
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 3.7e-105 386.0 351 58.7
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.7e-105 386.0 355 59.2
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 6.3e-105 385.2 353 58.6
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 8.3e-105 384.8 359 58.2
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 8.3e-105 384.8 385 57.1
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.3e-105 384.8 438 52.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.1e-104 384.4 438 54.6
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 1.1e-104 384.4 405 54.8
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.8e-104 383.6 359 57.7
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.8e-104 383.6 359 57.7
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 7.0e-104 381.7 438 52.5
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 4.5e-103 379.0 436 51.8
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.3e-102 377.5 397 53.9
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.7e-102 377.1 438 51.8
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.7e-102 377.1 379 56.2
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 5.0e-102 375.6 353 60.3
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 5.0e-102 375.6 353 60.6
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 5.0e-102 375.6 361 57.6
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 6.6e-102 375.2 443 51.7
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 6.6e-102 375.2 313 64.2
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-101 374.4 358 57.5
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 3.3e-101 372.9 370 55.7
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 7.2e-101 371.7 353 58.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 9.5e-101 371.3 478 49.6
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 1.0e-99 367.9 431 51.0
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 5.2e-99 365.5 312 63.5
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 2.0e-98 363.6 317 62.5
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 2.6e-98 363.2 338 59.5
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 3.4e-98 362.8 433 52.9
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 8.3e-97 358.2 432 52.8
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 1.6e-95 354.0 324 59.0
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.9e-94 349.4 442 50.2
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.1e-93 347.8 378 52.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 2.5e-93 346.7 396 52.0
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 4.3e-93 345.9 323 58.5
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 4.3e-93 345.9 327 56.6
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 6.2e-92 342.0 525 45.7
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.2e-87 327.8 431 49.4
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 9.2e-80 301.6 331 52.3
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.5e-77 291.6 334 50.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 2.8e-76 290.0 322 54.7
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.1e-69 268.1 251 59.4
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 8.9e-67 258.5 414 40.8
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 9.3e-64 248.4 359 42.6
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 3.5e-63 246.5 252 54.0
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-58 231.5 244 55.3
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.9e-48 197.6 337 40.1
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 1.0e-46 191.8 258 48.1
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.7e-46 189.1 138 71.0
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.9e-41 173.7 116 73.3
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.2e-39 168.3 388 32.0
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 9.6e-37 158.7 186 50.0
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 3.7e-36 156.8 200 49.5
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.7e-36 156.8 258 43.0
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 4.8e-36 156.4 364 31.3
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.8e-35 154.5 156 53.8
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 4.1e-35 153.3 112 71.4
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 2.2e-33 147.5 335 36.1
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 6.1e-31 139.4 210 43.8
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.8e-27 127.9 98 65.3
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-24 117.5 161 42.9
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 3.2e-24 117.1 78 73.1
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.3e-21 107.1 83 68.7
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.7e-20 103.6 73 69.9
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.1e-19 102.1 68 80.9
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 4.1e-19 100.1 94 57.4
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 6.9e-19 99.4 153 40.5
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 1.5e-18 98.2 57 84.2
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.8e-17 93.6 179 41.3
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-16 91.7 63 73.0
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-15 88.6 69 68.1
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.1e-15 87.8 61 68.9
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 1.4e-14 85.1 61 67.2
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 3.0e-14 84.0 61 68.9
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 3.0e-14 84.0 420 26.0
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 8.8e-14 82.4 61 65.6
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 5.7e-13 79.7 136 41.9
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 3.1e-11 73.9 96 46.9
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.1e-11 72.4 90 51.1
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.3e-09 68.6 150 32.0
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.1e-08 65.5 110 41.8
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 2.7e-07 60.8 416 23.8
SEGI_13080 Sequoiadendron giganteum HOM05D026866 ORTHO05D005197 4.7e-07 60.1 59 61.0
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 8.0e-07 59.3 40 70.0
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 8.8e-06 55.8 62 48.4


User provided reference genes

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