Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.4e-212 742.3 478 100.0
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.7e-46 190.7 250 48.0
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.7e-43 179.9 248 47.6
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.2e-38 165.2 192 52.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 2.8e-35 154.1 187 50.8
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 8.1e-35 152.5 191 49.7
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.2e-33 148.7 190 50.0
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 2.0e-33 147.9 511 44.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 4.4e-33 146.7 259 39.8
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 7.5e-33 146.0 190 48.4
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 9.8e-33 145.6 258 39.1
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.7e-32 144.8 273 37.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.7e-32 144.8 246 39.8
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 2.9e-32 144.1 248 40.7
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 6.4e-32 142.9 195 46.7
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.3e-32 142.5 191 47.1
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 8.3e-32 142.5 275 37.8
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 2.4e-31 141.0 254 40.6
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.3e-29 135.2 256 39.8
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.3e-29 135.2 278 35.3
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 2.3e-29 134.4 251 38.2
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.0e-29 134.0 253 39.1
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-29 133.3 245 40.0
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-29 133.3 245 41.6
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 1.5e-28 131.7 251 38.2
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 3.3e-28 130.6 257 36.6
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.8e-27 127.5 273 36.3
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.7e-27 126.7 273 35.9
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.7e-27 126.7 254 36.6
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 8.1e-27 125.9 251 37.5
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 8.1e-27 125.9 252 36.9
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 8.1e-27 125.9 271 37.6
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-26 125.6 273 36.3
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.1e-26 125.6 205 42.4
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.8e-26 124.8 467 41.8
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.3e-26 124.4 259 37.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.1e-26 124.0 255 38.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 4.0e-26 123.6 269 35.7
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 6.8e-26 122.9 225 38.2
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 8.9e-26 122.5 260 38.1
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.0e-25 121.3 247 38.9
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.6e-25 120.9 250 37.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.4e-25 120.6 253 36.4
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.4e-25 120.6 241 36.9
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 9.9e-25 119.0 271 35.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.9e-25 119.0 257 35.4
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 9.9e-25 119.0 271 35.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 9.9e-25 119.0 265 35.1
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.7e-24 118.2 250 37.6
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 2.2e-24 117.9 260 36.9
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 3.8e-24 117.1 239 37.7
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 3.8e-24 117.1 164 48.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 3.8e-24 117.1 273 35.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 8.4e-24 115.9 186 41.9
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.1e-23 115.5 263 35.7
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.9e-23 114.8 188 42.6
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 2.4e-23 114.4 267 36.0
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 2.4e-23 114.4 208 38.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 4.1e-23 113.6 187 42.8
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.1e-23 113.6 276 33.7
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 5.4e-23 113.2 176 46.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 5.4e-23 113.2 244 35.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 5.4e-23 113.2 244 35.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.1e-22 111.3 255 36.1
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 2.1e-22 111.3 249 34.9
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.1e-22 111.3 183 41.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 3.5e-22 110.5 172 41.9
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.5e-22 110.5 293 33.1
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 6.0e-22 109.8 259 34.7
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 7.8e-22 109.4 173 42.8
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 7.8e-22 109.4 284 34.2
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.0e-21 109.0 177 45.2
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 1.0e-21 109.0 170 44.7
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.7e-21 108.2 142 46.5
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.3e-21 107.8 291 30.2
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 3.9e-21 107.1 287 31.4
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.9e-21 107.1 231 37.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 6.6e-21 106.3 237 37.1
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.6e-21 106.3 258 34.1
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 8.6e-21 105.9 198 39.4
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-20 105.5 173 43.4
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-20 105.5 292 32.2
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-20 105.5 186 39.8
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.9e-20 104.8 258 32.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 3.3e-20 104.0 262 33.6
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 9.6e-20 102.4 254 32.7
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.6e-19 100.5 276 32.6
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.7e-19 100.1 263 35.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 6.2e-19 99.8 265 34.3
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 8.1e-19 99.4 259 35.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.1e-18 99.0 263 32.3
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 1.1e-18 99.0 252 33.3
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.4e-18 98.6 254 34.3
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.2e-18 96.7 152 46.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 8.9e-18 95.9 131 45.8
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 8.9e-18 95.9 241 34.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.2e-17 95.5 256 34.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.2e-17 95.5 256 34.8
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.5e-17 95.1 271 32.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.5e-17 95.1 299 25.8
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.5e-17 95.1 257 31.9
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 2.0e-17 94.7 272 32.4
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.4e-17 94.0 255 32.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 3.4e-17 94.0 265 31.7
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 5.8e-17 93.2 254 31.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 5.8e-17 93.2 187 38.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.8e-17 93.2 252 34.1
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 7.6e-17 92.8 248 32.7
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 7.6e-17 92.8 248 32.7
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.3e-16 92.0 297 29.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.7e-16 91.7 174 37.9
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-16 90.9 237 30.8
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 4.9e-16 90.1 256 33.2
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 6.4e-16 89.7 249 30.9
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 8.4e-16 89.4 183 36.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 8.4e-16 89.4 252 32.1
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 8.4e-16 89.4 137 43.8
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.4e-15 88.6 170 37.1
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.9e-15 88.2 273 31.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.2e-15 87.0 207 37.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.2e-14 85.5 261 30.3
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-14 85.1 281 30.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.1e-14 84.7 59 62.7
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.0e-13 82.4 200 32.5
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 3.0e-13 80.9 271 29.5
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 3.9e-13 80.5 263 28.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 3.9e-13 80.5 173 37.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 5.1e-13 80.1 185 37.3
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 6.6e-13 79.7 254 29.1
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 6.6e-13 79.7 187 38.5
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 8.7e-13 79.3 312 26.3
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 8.7e-13 79.3 292 28.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.5e-12 78.6 198 34.8
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.5e-12 77.8 257 30.4
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.5e-12 77.8 301 24.9
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.3e-12 77.0 127 40.2
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 4.3e-12 77.0 254 28.3
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.6e-12 76.6 247 31.6
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.3e-12 76.3 173 34.1
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 7.3e-12 76.3 195 33.3
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.3e-11 75.5 269 27.1
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 2.8e-11 74.3 60 56.7
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 8.1e-11 72.8 173 33.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.4e-10 72.0 257 29.2
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 1.8e-10 71.6 239 31.0
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 6.9e-10 69.7 161 34.2
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.9e-10 69.7 161 32.9
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.9e-10 69.7 270 25.6
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.5e-09 67.0 168 31.0
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 9.9e-09 65.9 261 27.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 9.9e-09 65.9 267 27.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.3e-08 65.5 271 25.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.7e-08 65.1 218 30.7
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.2e-08 64.7 201 31.8
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 2.9e-08 64.3 165 35.2
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 6.4e-08 63.2 177 31.6
Lsat_1_v5_gn_8_79621 Lactuca sativa HOM05D004060 ORTHO05D001964 8.4e-08 62.8 107 42.1
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.4e-07 62.0 263 27.4
Solyc10g080240.1 Solanum lycopersicum HOM05D004060 ORTHO05D004967 1.4e-07 62.0 40 72.5
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.4e-07 61.2 270 27.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.2e-07 60.8 270 26.7
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 3.2e-07 60.8 270 27.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.2e-07 60.8 270 26.7
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.2e-07 60.8 270 26.7
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 4.6e-06 57.0 267 25.5


User provided reference genes

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