Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g35562_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D003151 2.7e-82 308.5 147 100.0
QL04p018313 Quercus lobata HOM05D002949 ORTHO05D003151 3.6e-10 68.9 105 36.2
SMO339G0067 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 5.2e-09 65.1 109 33.0
Gohir.A11G173200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 6.8e-09 64.7 108 37.0
CAN.G424.14 Capsicum annuum HOM05D002949 ORTHO05D003151 8.9e-09 64.3 91 37.4
FvH4_1g11320 Fragaria vesca HOM05D004861 ORTHO05D001964 1.2e-08 63.9 129 33.3
Gorai.007G192100 Gossypium raimondii HOM05D004861 ORTHO05D001964 1.2e-08 63.9 108 37.0
Nitab4.5_0000190g0100 Nicotiana tabacum HOM05D002949 ORTHO05D003151 1.5e-08 63.5 95 34.7
TAR628G0932 Trochodendron aralioides HOM05D004861 ORTHO05D001964 2.0e-08 63.2 105 37.1
vmacro03809 Vaccinium macrocarpon HOM05D002949 ORTHO05D003151 2.0e-08 63.2 100 37.0
Hma1.2p1_1182F.1_g264820 Hydrangea macrophylla HOM05D002949 ORTHO05D003151 2.6e-08 62.8 94 35.1
Lj2A279T59 Lonicera japonica HOM05D002949 ORTHO05D003151 2.6e-08 62.8 101 37.6
Medtr2g011800 Medicago truncatula HOM05D002949 ORTHO05D003151 2.6e-08 62.8 90 37.8
Oeu051329.1 Olea europaea HOM05D002949 ORTHO05D003151 2.6e-08 62.8 106 35.8
CAN.G132.15 Capsicum annuum HOM05D002949 ORTHO05D003151 3.4e-08 62.4 117 32.5
CiPaw.07G061400 Carya illinoinensis HOM05D004861 ORTHO05D001964 3.4e-08 62.4 109 36.7
Thecc.01G013900 Theobroma cacao HOM05D004861 ORTHO05D001964 3.4e-08 62.4 108 36.1
Lj4g0021109 Lotus japonicus HOM05D002949 ORTHO05D003151 4.4e-08 62.0 95 34.7
RcHm_v2.0_Chr2g0098831 Rosa chinensis HOM05D004861 ORTHO05D001964 4.4e-08 62.0 108 36.1
TWI63G1783 Tripterygium wilfordii HOM05D002949 ORTHO05D003151 4.4e-08 62.0 96 38.5
Cfa007008 Carpinus fangiana HOM05D004861 ORTHO05D001964 7.5e-08 61.2 109 35.8
Haze_03721 Corylus avellana HOM05D004861 ORTHO05D001964 7.5e-08 61.2 109 35.8
Duzib264G0687 Durio zibethinus HOM05D004861 ORTHO05D001964 7.5e-08 61.2 108 35.2
Potri.011G042800 Populus trichocarpa HOM05D002949 ORTHO05D003151 7.5e-08 61.2 101 35.6
CANSAT01G1088 Cannabis sativa HOM05D004861 ORTHO05D001964 9.8e-08 60.8 105 35.2
Lj4A223T35 Lonicera japonica HOM05D004861 ORTHO05D001964 9.8e-08 60.8 105 37.1
Nitab4.5_0009994g0030 Nicotiana tabacum HOM05D002949 ORTHO05D003151 9.8e-08 60.8 91 34.1
Oeu043690.1 Olea europaea HOM05D002949 ORTHO05D003151 9.8e-08 60.8 106 34.9
SEGI_39032 Sequoiadendron giganteum HOM05D004861 ORTHO05D001964 9.8e-08 60.8 127 30.7
PGSC0003DMG400011249 Solanum tuberosum HOM05D002949 ORTHO05D003151 9.8e-08 60.8 95 37.9
QL06p051243 Quercus lobata HOM05D004861 ORTHO05D001964 1.3e-07 60.5 109 34.9
AUR62016898 Chenopodium quinoa HOM05D002949 ORTHO05D003151 1.7e-07 60.1 120 32.5
Dinv40479 Davidia involucrata HOM05D002949 ORTHO05D003151 1.7e-07 60.1 61 47.5
PSO170G2109 Papaver somniferum HOM05D004861 ORTHO05D001964 1.7e-07 60.1 105 36.2
Peaxi162Scf00083g00012 Petunia axillaris HOM05D002949 ORTHO05D003151 1.7e-07 60.1 99 33.3
Phvul.006G192100 Phaseolus vulgaris HOM05D002949 ORTHO05D003151 1.7e-07 60.1 86 39.5
PGR102G1053 Punica granatum HOM05D004861 ORTHO05D001964 1.7e-07 60.1 107 40.2
AUR62003332 Chenopodium quinoa HOM05D004861 ORTHO05D001964 2.2e-07 59.7 132 31.1
Dinv33667 Davidia involucrata HOM05D004861 ORTHO05D001964 2.2e-07 59.7 108 36.1
Lsat_1_v5_gn_2_75700 Lactuca sativa HOM05D004861 ORTHO05D001964 2.2e-07 59.7 105 35.2
Sabra11G0029400 Salix brachista HOM05D002949 ORTHO05D003151 2.2e-07 59.7 101 34.7
MSTRG.15935 Avicennia marina HOM05D002949 ORTHO05D003151 2.9e-07 59.3 123 34.1
CAN.G289.27 Capsicum annuum HOM05D002949 ORTHO05D003151 2.9e-07 59.3 95 34.7
Cpa.g.sc6.293 Carica papaya HOM05D004861 ORTHO05D001964 2.9e-07 59.3 107 37.4
Solyc03g006640.3 Solanum lycopersicum HOM05D002949 ORTHO05D003151 2.9e-07 59.3 96 36.5
Sopen03g002650 Solanum pennellii HOM05D002949 ORTHO05D003151 2.9e-07 59.3 93 34.4
Sopen10g001460 Solanum pennellii HOM05D002949 ORTHO05D003151 2.9e-07 59.3 95 36.8
TPR.G19498 Trifolium pratense HOM05D004861 ORTHO05D001964 2.9e-07 59.3 126 33.3
TAR626G0808 Trochodendron aralioides HOM05D002949 ORTHO05D003151 2.9e-07 59.3 105 31.4
AUR62029512 Chenopodium quinoa HOM05D004861 ORTHO05D001964 3.7e-07 58.9 132 31.1
ClCG10G000560 Citrullus lanatus HOM05D004861 ORTHO05D001964 3.7e-07 58.9 108 35.2
MELO3C013752.2 Cucumis melo HOM05D004861 ORTHO05D001964 3.7e-07 58.9 108 35.2
CsaV3_3G000640 Cucumis sativus L. HOM05D004861 ORTHO05D001964 3.7e-07 58.9 108 35.2
Dinv40122 Davidia involucrata HOM05D004861 ORTHO05D001964 3.7e-07 58.9 108 35.2
Solyc02g079150.2 Solanum lycopersicum HOM05D002949 ORTHO05D003151 3.7e-07 58.9 95 34.7
vmacro15865 Vaccinium macrocarpon HOM05D002949 ORTHO05D003151 3.7e-07 58.9 99 32.3
GSVIVG01006513001 Vitis vinifera HOM05D004861 ORTHO05D001964 3.7e-07 58.9 105 36.2
MSTRG.7290 Avicennia marina HOM05D002949 ORTHO05D003151 4.9e-07 58.5 94 39.4
Glyma.16G123900 Glycine max HOM05D004861 ORTHO05D001964 4.9e-07 58.5 109 33.9
MD15G1241500 Malus domestica HOM05D004861 ORTHO05D001964 4.9e-07 58.5 131 29.8
Oeu014708.1 Olea europaea HOM05D002949 ORTHO05D003151 4.9e-07 58.5 106 34.9
Oeu059547.2 Olea europaea HOM05D002949 ORTHO05D003151 4.9e-07 58.5 106 34.0
Hund14064 Selenicereus undatus HOM05D004861 ORTHO05D001964 4.9e-07 58.5 133 33.8
VMungo0540G1141 Vigna mungo HOM05D002949 ORTHO05D003151 4.9e-07 58.5 76 38.2
CSS0042931 Camellia sinensis var. sinensis HOM05D002949 ORTHO05D003151 6.4e-07 58.2 74 40.5
Phvul.003G265700 Phaseolus vulgaris HOM05D004861 ORTHO05D001964 6.4e-07 58.2 109 33.9
Potri.004G034400 Populus trichocarpa HOM05D002949 ORTHO05D003151 6.4e-07 58.2 101 32.7
Sopen02g023950 Solanum pennellii HOM05D002949 ORTHO05D003151 6.4e-07 58.2 95 33.7
VMungo0251G3709 Vigna mungo HOM05D004861 ORTHO05D001964 6.4e-07 58.2 109 33.9
Lj4g0003896 Lotus japonicus HOM05D004861 ORTHO05D001964 8.3e-07 57.8 108 35.2
Os10g0438500 Oryza sativa ssp. japonica HOM05D004861 ORTHO05D001964 8.3e-07 57.8 106 34.9
PGR004G0173 Punica granatum HOM05D002949 ORTHO05D003151 8.3e-07 57.8 95 41.1
Solyc10g005480.3 Solanum lycopersicum HOM05D002949 ORTHO05D003151 8.3e-07 57.8 95 35.8
PGSC0003DMG400005038 Solanum tuberosum HOM05D002949 ORTHO05D003151 8.3e-07 57.8 93 32.3
Ciclev10026280m.g Citrus clementina HOM05D004861 ORTHO05D001964 1.1e-06 57.4 105 33.3
Cc02_g12440 Coffea canephora HOM05D002949 ORTHO05D003151 1.1e-06 57.4 90 35.6
Gohir.A02G172700 Gossypium hirsutum HOM05D004861 ORTHO05D001964 1.1e-06 57.4 108 38.0
Lj6g0014531 Lotus japonicus HOM05D002949 ORTHO05D003151 1.1e-06 57.4 73 37.0
Nitab4.5_0002222g0070 Nicotiana tabacum HOM05D002949 ORTHO05D003151 1.1e-06 57.4 96 34.4
SalBow3G1445 Salvia bowleyana HOM05D004861 ORTHO05D001964 1.1e-06 57.4 122 32.0
SalBow3G4058 Salvia bowleyana HOM05D004861 ORTHO05D001964 1.1e-06 57.4 122 32.0
Sc03g0003720 Simmondsia chinensis HOM05D004861 ORTHO05D001964 1.1e-06 57.4 132 30.3
TAR376G0516 Trochodendron aralioides HOM05D004861 ORTHO05D001964 1.1e-06 57.4 105 35.2
CSS0021454 Camellia sinensis var. sinensis HOM05D004861 ORTHO05D001964 1.4e-06 57.0 105 34.3
Ca_18482_v3 Cicer arietinum L. HOM05D002949 ORTHO05D003151 1.4e-06 57.0 93 34.4
Thhalv10009722m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 1.4e-06 57.0 73 41.1
Medtr4g091100 Medicago truncatula HOM05D002949 ORTHO05D003151 1.4e-06 57.0 94 35.1
Prupe.7G172500 Prunus persica HOM05D004861 ORTHO05D001964 1.4e-06 57.0 108 34.3
MSTRG.2733 Avicennia marina HOM05D004861 ORTHO05D001964 1.9e-06 56.6 123 35.0
EL10Ac6g15516 Beta vulgaris HOM05D004861 ORTHO05D001964 1.9e-06 56.6 132 29.5
DCAR_028132 Daucus carota HOM05D002949 ORTHO05D003151 1.9e-06 56.6 82 37.8
Eucgr.D00712 Eucalyptus grandis HOM05D002949 ORTHO05D003151 1.9e-06 56.6 100 34.0
PSO541G5210 Papaver somniferum HOM05D002949 ORTHO05D003151 1.9e-06 56.6 47 51.1
PSO675G0167 Papaver somniferum HOM05D002949 ORTHO05D003151 1.9e-06 56.6 47 51.1
Psat4g101760 Pisum sativum HOM05D004861 ORTHO05D001964 1.9e-06 56.6 106 33.0
Rhsim13G0169900 Rhododendron simsii HOM05D002949 ORTHO05D003151 1.9e-06 56.6 92 38.0
SMO367G0386 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 1.9e-06 56.6 101 34.7
TPR.G32423 Trifolium pratense HOM05D002949 ORTHO05D003151 1.9e-06 56.6 94 35.1
TWI38G1696 Tripterygium wilfordii HOM05D002949 ORTHO05D003151 1.9e-06 56.6 94 35.1
Aqoxy5G01828 Aquilegia oxysepala HOM05D004861 ORTHO05D001964 2.4e-06 56.2 108 35.2
MD02G1127300 Malus domestica HOM05D004861 ORTHO05D001964 2.4e-06 56.2 131 29.0
Nn1g03898 Nelumbo nucifera HOM05D002949 ORTHO05D003151 2.4e-06 56.2 99 30.3
Potri.005G110200 Populus trichocarpa HOM05D004861 ORTHO05D001964 2.4e-06 56.2 108 34.3
Sabra05G0090400 Salix brachista HOM05D004861 ORTHO05D001964 2.4e-06 56.2 108 34.3
SEGI_03921 Sequoiadendron giganteum HOM05D004861 ORTHO05D001964 2.4e-06 56.2 41 63.4
Aa31LG6G12880 Aethionema arabicum HOM05D004861 ORTHO05D001964 3.2e-06 55.8 107 34.6
arahy.Tifrunner.gnm1.ann1.67ZU0R Arachis hypogaea HOM05D004861 ORTHO05D001964 3.2e-06 55.8 105 34.3
arahy.Tifrunner.gnm1.ann1.HCQ68S Arachis hypogaea HOM05D004861 ORTHO05D001964 3.2e-06 55.8 105 34.3
Ciclev10016832m.g Citrus clementina HOM05D002949 ORTHO05D003151 3.2e-06 55.8 92 32.6
Duzib147G1106 Durio zibethinus HOM05D004861 ORTHO05D001964 3.2e-06 55.8 41 56.1
Gohir.D11G180200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 3.2e-06 55.8 41 56.1
Gorai.003G007500 Gossypium raimondii HOM05D004861 ORTHO05D001964 3.2e-06 55.8 108 37.0
MBI05_g33209_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D001964 3.2e-06 55.8 105 36.2
Sed0012496 Sechium edule HOM05D004861 ORTHO05D001964 3.2e-06 55.8 105 34.3
PGSC0003DMG400003650 Solanum tuberosum HOM05D004861 ORTHO05D001964 3.2e-06 55.8 56 46.4
SGA_v2.0_scaffold2G00975 Striga asiatica HOM05D004861 ORTHO05D001964 3.2e-06 55.8 105 34.3
EL10Ac8g20529 Beta vulgaris HOM05D002949 ORTHO05D003151 4.1e-06 55.5 104 31.7
Nitab4.5_0005936g0030 Nicotiana tabacum HOM05D002949 ORTHO05D003151 4.1e-06 55.5 95 35.8
Os07g0561300 Oryza sativa ssp. japonica HOM05D002949 ORTHO05D003151 4.1e-06 55.5 85 32.9
Psat7g108440 Pisum sativum HOM05D002949 ORTHO05D003151 4.1e-06 55.5 96 34.4
CSS0030314 Camellia sinensis var. sinensis HOM05D002949 ORTHO05D003151 5.4e-06 55.1 104 30.8
Gohir.D03G007200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 5.4e-06 55.1 108 37.0
MBI02_g06001_MAGBIO Magnolia biondii HOM05D002949 ORTHO05D003151 5.4e-06 55.1 90 32.2
Nn5g30794 Nelumbo nucifera HOM05D004861 ORTHO05D001964 5.4e-06 55.1 103 35.0
THA.LOC104819741 Tarenaya hassleriana HOM05D004861 ORTHO05D001964 5.4e-06 55.1 105 35.2
VMungo0251G2283 Vigna mungo HOM05D002949 ORTHO05D003151 5.4e-06 55.1 72 38.9
ATR0693G092 Amborella trichopoda HOM05D002949 ORTHO05D003151 7.0e-06 54.7 44 56.8
BcaNung04468 Brassica carinata HOM05D002949 ORTHO05D003151 7.0e-06 54.7 86 36.0
C05p09520 Brassica napus HOM05D002949 ORTHO05D003151 7.0e-06 54.7 86 36.0
BolC5t29694H Brassica oleracea HOM05D002949 ORTHO05D003151 7.0e-06 54.7 86 36.0
CARHR011490 Cardamine hirsuta HOM05D002949 ORTHO05D003151 7.0e-06 54.7 57 42.1
CARHR051300 Cardamine hirsuta HOM05D002949 ORTHO05D003151 7.0e-06 54.7 100 33.0
CARHR244330 Cardamine hirsuta HOM05D004861 ORTHO05D001964 7.0e-06 54.7 105 34.3
Ca_03631_v3 Cicer arietinum L. HOM05D004861 ORTHO05D001964 7.0e-06 54.7 108 33.3
ClCG00G005360 Citrullus lanatus HOM05D002949 ORTHO05D003151 7.0e-06 54.7 66 37.9
ClCG01G022560 Citrullus lanatus HOM05D002949 ORTHO05D003151 7.0e-06 54.7 66 37.9
Cc07_g11120 Coffea canephora HOM05D004861 ORTHO05D001964 7.0e-06 54.7 105 34.3
ECA232G4489 Erigeron canadensis HOM05D004861 ORTHO05D001964 7.0e-06 54.7 105 32.4
Glyma.07G190100 Glycine max HOM05D002949 ORTHO05D003151 7.0e-06 54.7 76 34.2
Glyma.13G246200 Glycine max HOM05D002949 ORTHO05D003151 7.0e-06 54.7 61 39.3
Lalb_Chr09g0334231 Lupinus albus HOM05D004861 ORTHO05D001964 7.0e-06 54.7 109 32.1
Lalb_Chr18g0057181 Lupinus albus HOM05D002949 ORTHO05D003151 7.0e-06 54.7 100 34.0
MD05G1325400 Malus domestica HOM05D002949 ORTHO05D003151 7.0e-06 54.7 100 33.0
ECA238G3415 Erigeron canadensis HOM05D004861 ORTHO05D001964 9.2e-06 54.3 122 32.8
Thhalv10023716m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 9.2e-06 54.3 93 33.3
HanXRQChr05g0131241 Helianthus annuus HOM05D002949 ORTHO05D003151 9.2e-06 54.3 112 30.4
HanXRQChr13g0414571 Helianthus annuus HOM05D004861 ORTHO05D001964 9.2e-06 54.3 105 36.2
MD10G1303400 Malus domestica HOM05D002949 ORTHO05D003151 9.2e-06 54.3 53 45.3
Pp3c20_19230 Physcomitrium patens HOM05D004861 ORTHO05D001964 9.2e-06 54.3 41 53.7
Prupe.4G036800 Prunus persica HOM05D002949 ORTHO05D003151 9.2e-06 54.3 96 34.4


User provided reference genes

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