Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 2.7e-41 171.4 77 100.0
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.8e-21 105.5 48 97.9
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 5.5e-18 94.0 48 83.3
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 5.5e-18 94.0 48 83.3
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 5.5e-18 94.0 48 83.3
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.2e-17 92.8 48 81.2
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.6e-17 92.4 48 83.3
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 4.6e-17 90.9 47 83.0
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 4.6e-17 90.9 48 81.2
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 4.6e-17 90.9 48 81.2
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 7.9e-17 90.1 46 84.8
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 7.9e-17 90.1 48 81.2
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 7.9e-17 90.1 48 79.2
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 7.9e-17 90.1 46 84.8
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.0e-16 89.7 47 80.9
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 1.0e-16 89.7 48 81.2
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 1.0e-16 89.7 48 81.2
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.0e-16 89.7 47 83.0
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 1.8e-16 89.0 48 75.0
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 1.8e-16 89.0 46 84.8
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.8e-16 89.0 46 84.8
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.3e-16 88.6 47 80.9
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 2.3e-16 88.6 47 80.9
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.3e-16 88.6 47 80.9
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.0e-16 88.2 46 82.6
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 3.0e-16 88.2 48 77.1
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 3.0e-16 88.2 47 80.9
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 5.1e-16 87.4 48 75.0
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 5.1e-16 87.4 47 78.7
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 6.7e-16 87.0 48 77.1
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 8.7e-16 86.7 48 75.0
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 8.7e-16 86.7 48 75.0
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 1.1e-15 86.3 41 87.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.1e-15 86.3 45 84.4
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-15 85.9 48 75.0
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.5e-15 85.9 48 75.0
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 1.5e-15 85.9 48 77.1
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 1.5e-15 85.9 48 77.1
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 1.5e-15 85.9 48 75.0
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.9e-15 85.5 47 78.7
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.9e-15 85.5 46 80.4
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.5e-15 85.1 48 72.9
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.5e-15 85.1 47 80.9
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 2.5e-15 85.1 48 77.1
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 3.3e-15 84.7 48 75.0
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.3e-15 84.7 48 75.0
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 4.3e-15 84.3 46 80.4
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 4.3e-15 84.3 55 67.3
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 4.3e-15 84.3 48 77.1
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 4.3e-15 84.3 48 72.9
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 7.4e-15 83.6 48 77.1
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 7.4e-15 83.6 48 77.1
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 7.4e-15 83.6 48 77.1
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 7.4e-15 83.6 48 72.9
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 9.7e-15 83.2 48 75.0
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.3e-14 82.8 47 76.6
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 2.2e-14 82.0 45 77.8
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 2.2e-14 82.0 43 76.7
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-14 81.6 48 70.8
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-14 81.6 48 70.8
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-14 81.6 45 75.6
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.8e-14 81.6 45 75.6
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 48 75.0
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 3.7e-14 81.3 48 72.9
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 44 79.5
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 44 79.5
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.7e-14 81.3 44 79.5
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 3.7e-14 81.3 48 75.0
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 48 70.8
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 3.7e-14 81.3 46 71.7
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 3.7e-14 81.3 48 72.9
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 4.8e-14 80.9 46 78.3
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 4.8e-14 80.9 46 78.3
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 4.8e-14 80.9 46 73.9
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 4.8e-14 80.9 45 75.6
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 4.8e-14 80.9 48 70.8
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 4.8e-14 80.9 45 71.1
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 6.3e-14 80.5 48 72.9
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 6.3e-14 80.5 47 72.3
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 6.3e-14 80.5 43 79.1
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 6.3e-14 80.5 45 73.3
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 8.2e-14 80.1 46 76.1
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 8.2e-14 80.1 48 72.9
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 8.2e-14 80.1 48 72.9
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 8.2e-14 80.1 48 72.9
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.2e-14 80.1 45 75.6
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.2e-14 80.1 45 75.6
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 8.2e-14 80.1 47 74.5
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 1.1e-13 79.7 48 75.0
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 1.1e-13 79.7 49 71.4
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.4e-13 79.3 47 74.5
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 1.4e-13 79.3 47 70.2
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 1.8e-13 79.0 43 79.1
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.8e-13 79.0 43 79.1
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.8e-13 79.0 47 74.5
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-13 78.6 46 76.1
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-13 78.6 46 76.1
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.4e-13 78.6 46 76.1
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.4e-13 78.6 46 76.1
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 2.4e-13 78.6 45 73.3
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 3.1e-13 78.2 43 79.1
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 4.1e-13 77.8 46 73.9
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 4.1e-13 77.8 48 70.8
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 4.1e-13 77.8 46 69.6
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 4.1e-13 77.8 48 72.9
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 5.3e-13 77.4 48 66.7
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 5.3e-13 77.4 61 62.3
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 5.3e-13 77.4 46 69.6
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 6.9e-13 77.0 48 66.7
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 6.9e-13 77.0 46 71.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 9.1e-13 76.6 48 68.8
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 9.1e-13 76.6 46 73.9
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 9.1e-13 76.6 48 66.7
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 1.2e-12 76.3 48 72.9
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.0e-12 75.5 47 66.0
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.6e-12 75.1 47 66.0
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 2.6e-12 75.1 47 66.0
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 3.4e-12 74.7 48 64.6
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.4e-12 74.7 41 73.2
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 5.9e-12 73.9 47 68.1
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 5.9e-12 73.9 47 68.1
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 5.9e-12 73.9 45 71.1
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 7.7e-12 73.6 47 66.0
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 7.7e-12 73.6 40 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 1.0e-11 73.2 47 70.2
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 1.0e-11 73.2 46 73.9
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 1.0e-11 73.2 41 70.7
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 1.0e-11 73.2 41 70.7
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 1.7e-11 72.4 41 75.6
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.2e-11 72.0 41 70.7
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 2.9e-11 71.6 45 66.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 3.8e-11 71.2 41 70.7
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 5.0e-11 70.9 48 62.5
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 6.5e-11 70.5 40 77.5
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 6.5e-11 70.5 40 65.0
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 6.5e-11 70.5 40 75.0
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 8.5e-11 70.1 48 66.7
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 1.9e-10 68.9 43 67.4
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 2.5e-10 68.6 40 65.0
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 9.4e-10 66.6 93 39.8
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 2.1e-09 65.5 43 67.4
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 3.6e-09 64.7 65 53.8
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 1.4e-08 62.8 40 60.0
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 2.3e-08 62.0 40 72.5
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 2.3e-08 62.0 40 67.5
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.7e-08 60.5 41 56.1
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 6.7e-08 60.5 47 61.7
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 2.2e-06 55.5 30 76.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.8e-06 55.1 29 82.8


User provided reference genes

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