Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 4.2e-181 637.9 317 100.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.1e-109 400.6 242 81.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 1.1e-107 394.0 242 81.0
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.4e-107 393.7 231 80.5
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.0e-106 389.8 235 80.9
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.6e-106 389.4 281 71.5
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 2.6e-106 389.4 271 73.1
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 6.4e-105 384.8 240 77.9
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.9e-104 383.3 230 80.4
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.2e-104 382.5 242 77.7
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 5.4e-104 381.7 232 81.9
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 7.1e-104 381.3 267 71.9
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 9.2e-104 380.9 273 71.1
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 9.2e-104 380.9 298 67.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 9.2e-104 380.9 230 79.1
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-103 379.8 236 78.4
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 2.1e-103 379.8 242 77.7
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.7e-103 379.4 296 66.9
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 4.6e-103 378.6 282 71.3
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.6e-103 378.6 230 79.6
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-103 378.6 304 66.8
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.6e-103 378.6 304 66.8
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 4.6e-103 378.6 273 71.4
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 6.0e-103 378.3 230 77.8
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.0e-102 377.5 309 65.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.3e-102 377.1 275 70.5
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.7e-102 376.7 273 69.6
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.9e-102 375.6 284 68.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 3.9e-102 375.6 267 71.5
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 5.1e-102 375.2 292 66.4
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 6.6e-102 374.8 248 75.0
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.6e-102 374.8 230 78.3
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 6.6e-102 374.8 254 72.0
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.1e-101 374.0 241 76.3
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.1e-101 374.0 273 70.3
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.5e-101 373.6 231 78.4
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 7.3e-101 371.3 279 68.1
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.2e-100 370.5 296 64.5
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.6e-100 370.2 241 76.3
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.6e-100 370.2 283 67.1
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 4.7e-100 368.6 232 75.9
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.7e-100 368.6 243 73.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.7e-100 368.6 230 78.7
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.4e-99 367.1 298 65.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-99 367.1 270 68.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-99 367.1 270 68.5
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.8e-99 366.7 233 77.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 1.8e-99 366.7 279 67.4
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.8e-99 366.7 230 76.5
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 5.2e-99 365.2 253 72.3
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 5.2e-99 365.2 282 68.4
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.2e-99 365.2 232 76.7
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 5.2e-99 365.2 279 67.4
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 6.9e-99 364.8 231 76.2
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 8.9e-99 364.4 279 66.3
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 8.9e-99 364.4 229 76.4
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.2e-98 364.0 249 71.5
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.2e-98 364.0 241 73.9
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.5e-98 363.6 249 72.3
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.5e-98 363.6 241 75.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.5e-98 363.6 283 66.8
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.6e-98 362.8 302 64.6
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.4e-98 362.5 229 77.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 3.4e-98 362.5 229 77.3
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 4.4e-98 362.1 232 74.6
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 5.8e-98 361.7 231 75.8
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.3e-97 360.5 229 74.7
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.7e-97 360.1 295 62.4
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 2.9e-97 359.4 229 76.0
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 4.9e-97 358.6 305 63.6
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 6.4e-97 358.2 229 74.2
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.1e-96 357.5 272 68.4
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.1e-96 357.5 271 67.9
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 1.4e-96 357.1 230 75.2
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.2e-96 355.9 230 73.5
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 3.2e-96 355.9 271 68.3
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.2e-96 355.9 304 63.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 9.3e-96 354.4 266 67.7
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.6e-95 353.6 301 61.8
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 2.1e-95 353.2 302 61.9
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 4.6e-95 352.1 229 74.7
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 7.8e-95 351.3 229 72.1
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-94 350.9 231 74.0
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.3e-94 350.5 276 66.7
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.3e-94 350.5 276 66.7
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.3e-94 349.7 292 63.4
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.3e-94 349.7 272 67.3
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.0e-94 349.4 230 73.5
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-93 347.1 302 61.6
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.5e-93 347.1 302 61.6
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.3e-93 345.9 252 68.7
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 1.4e-91 340.5 280 61.8
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 9.9e-90 334.3 261 64.8
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-87 324.7 236 70.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.3e-86 323.2 196 78.1
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 8.7e-86 321.2 259 61.0
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.3e-85 319.3 338 53.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.1e-83 314.3 233 68.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 7.6e-82 308.1 235 63.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 9.9e-82 307.8 194 75.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.1e-80 301.6 223 66.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 1.6e-76 290.4 303 52.8
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 5.8e-74 282.0 197 67.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.5e-66 257.3 168 78.6
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.3e-65 254.2 155 81.9
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 3.6e-63 246.1 167 71.9
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.8e-62 243.8 156 74.4
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 2.8e-60 236.5 200 63.5
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-60 235.7 156 73.7
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 3.0e-54 216.5 198 56.6
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.9e-54 216.1 130 82.3
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.8e-51 207.2 171 64.9
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.8e-51 207.2 181 62.4
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.4e-51 206.8 207 57.0
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 9.1e-51 204.9 137 75.2
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-50 204.5 127 75.6
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.0e-50 203.8 171 63.7
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.8e-49 199.5 228 50.9
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-44 182.2 162 60.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-43 181.4 156 62.8
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-43 181.0 156 63.5
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-43 179.1 174 57.5
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-42 177.9 156 62.2
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 5.9e-42 175.6 156 62.8
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-41 174.1 156 60.9
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-40 171.0 154 61.0
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-39 167.5 156 59.0
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-38 164.5 108 76.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-36 155.6 143 60.8
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 7.0e-35 152.1 156 57.1
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 9.1e-35 151.8 98 73.5
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 5.0e-33 146.0 99 70.7
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.2e-32 143.3 88 76.1
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-32 143.3 158 54.4
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-32 143.3 158 54.4
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.2e-32 142.9 124 62.1
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-31 141.0 122 62.3
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 4.7e-31 139.4 123 62.6
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-30 136.7 94 74.5
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-29 134.4 107 66.4
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 3.1e-27 126.7 80 76.2
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 7.0e-27 125.6 333 32.1
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-24 118.2 139 53.2
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 3.2e-24 116.7 108 60.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-21 105.1 169 42.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 7.8e-18 95.5 70 71.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.9e-16 90.9 53 79.2
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-16 90.1 95 53.7
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.3e-16 90.1 57 75.4
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-14 84.7 89 55.1
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 5.6e-08 62.8 111 36.9
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.6e-07 61.2 38 76.3
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 2.8e-07 60.5 36 77.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 4.7e-07 59.7 35 80.0
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 8.0e-07 58.9 57 50.9
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 2.3e-06 57.4 34 73.5
PRCOL_00005105 Prasinoderma coloniale HOM05D024473 ORTHO05D028792 2.3e-06 57.4 130 34.6


User provided reference genes

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