Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 6.6e-94 347.4 184 100.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.6e-82 308.9 184 89.7
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.1e-79 299.3 185 85.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.2e-74 283.5 184 80.4
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-73 279.6 184 79.9
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.7e-73 279.6 184 79.9
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 6.4e-73 277.7 184 79.3
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.4e-72 275.8 193 74.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 3.5e-71 271.9 189 76.2
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 7.8e-71 270.8 189 75.7
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.0e-70 270.4 189 75.7
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.3e-70 270.0 189 75.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.3e-70 270.0 198 72.7
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.3e-70 269.2 157 85.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 2.3e-70 269.2 189 75.1
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.0e-70 268.9 156 87.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.9e-70 268.5 192 75.5
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 5.1e-70 268.1 189 75.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 6.6e-70 267.7 163 81.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 6.6e-70 267.7 189 74.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 8.6e-70 267.3 191 74.9
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 8.6e-70 267.3 185 76.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.1e-69 266.9 182 74.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.5e-69 266.5 189 74.6
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.9e-69 266.2 191 73.8
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.5e-69 265.8 189 76.2
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.3e-69 265.4 182 74.7
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 3.3e-69 265.4 155 86.5
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 3.3e-69 265.4 191 74.3
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 5.6e-69 264.6 187 73.8
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 5.6e-69 264.6 189 74.6
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.3e-69 264.2 189 74.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 7.3e-69 264.2 189 76.2
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.6e-69 263.8 182 74.2
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 9.6e-69 263.8 189 73.0
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 2.1e-68 262.7 189 72.5
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.8e-68 262.3 185 75.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 4.7e-68 261.5 189 74.1
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.7e-68 261.5 183 77.0
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 6.2e-68 261.2 189 74.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 6.2e-68 261.2 185 74.6
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 8.1e-68 260.8 189 73.5
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.8e-67 259.6 188 75.0
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.4e-67 259.2 192 72.4
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 2.4e-67 259.2 188 72.9
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 5.2e-67 258.1 181 76.8
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 5.2e-67 258.1 187 72.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.8e-67 257.7 200 70.0
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.2e-66 256.9 176 77.3
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.2e-66 256.9 189 72.5
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.0e-66 256.1 197 70.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.4e-66 255.4 156 81.4
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 3.4e-66 255.4 191 71.2
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.4e-66 255.4 201 69.7
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.4e-66 255.0 192 70.8
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.4e-66 255.0 192 70.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.4e-66 255.0 189 70.4
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 7.6e-66 254.2 156 81.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.6e-66 254.2 201 69.7
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.6e-66 254.2 201 69.7
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.3e-65 253.4 186 72.0
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.3e-65 253.4 196 68.4
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 1.3e-65 253.4 191 70.2
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 1.3e-65 253.4 191 70.2
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.2e-65 252.7 192 70.8
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 3.8e-65 251.9 193 68.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.9e-65 251.5 195 70.8
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 8.4e-65 250.8 193 70.5
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.4e-64 249.2 158 80.4
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 3.2e-64 248.8 189 69.8
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.4e-64 248.1 188 70.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.4e-64 248.1 175 72.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 9.3e-64 247.3 188 70.7
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 9.3e-64 247.3 177 71.8
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.2e-63 246.9 166 74.1
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.6e-63 246.5 176 71.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.7e-63 245.7 191 67.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 4.6e-63 245.0 191 67.0
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.6e-63 245.0 182 70.9
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 4.6e-63 245.0 187 67.9
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 4.6e-63 245.0 159 76.1
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 7.8e-63 244.2 191 67.0
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 7.8e-63 244.2 193 68.9
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.0e-62 243.8 188 67.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.3e-62 243.4 156 78.2
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.7e-62 243.0 189 67.2
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.7e-62 243.0 182 69.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 2.3e-62 242.7 192 66.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.3e-62 242.7 177 71.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.9e-62 241.9 198 67.7
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.1e-62 241.5 190 66.3
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 5.1e-62 241.5 187 68.4
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 6.6e-62 241.1 187 69.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 8.7e-62 240.7 195 65.1
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.5e-61 240.0 169 74.0
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.9e-61 239.6 196 67.9
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.5e-61 239.2 179 68.7
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 2.5e-61 239.2 172 75.0
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.5e-61 239.2 187 67.9
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 4.3e-61 238.4 163 73.0
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 4.3e-61 238.4 199 64.3
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 7.3e-61 237.7 179 69.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 7.3e-61 237.7 192 66.1
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 9.6e-61 237.3 186 67.7
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 9.6e-61 237.3 193 67.9
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.6e-60 236.5 177 68.9
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.6e-60 236.5 151 79.5
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 3.6e-60 235.3 192 67.7
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.4e-59 233.4 194 69.1
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 4.0e-59 231.9 160 71.9
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.6e-58 229.2 183 67.8
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 7.6e-58 227.6 192 63.0
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.9e-57 225.7 193 64.2
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 4.9e-57 224.9 195 63.1
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 8.4e-57 224.2 208 61.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 5.4e-56 221.5 162 71.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.6e-55 219.9 185 64.3
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 3.5e-55 218.8 192 64.6
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.9e-54 215.3 184 63.6
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.1e-54 214.9 192 64.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 6.6e-54 214.5 163 69.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 1.9e-53 213.0 171 66.7
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 7.3e-53 211.1 163 69.9
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 6.9e-51 204.5 256 50.8
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 4.9e-49 198.4 168 64.3
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 8.4e-49 197.6 135 72.6
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 5.4e-48 194.9 151 68.9
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.7e-47 192.6 155 63.9
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.0e-46 190.7 106 90.6
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 3.0e-46 189.1 165 62.4
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 3.9e-46 188.7 198 57.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 8.7e-46 187.6 198 56.6
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.8e-43 179.9 158 57.0
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.4e-43 179.5 231 50.2
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.3e-41 173.7 108 76.9
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.7e-41 173.3 132 68.9
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.3e-40 167.5 135 67.4
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.6e-39 166.8 173 56.1
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.7e-39 166.0 154 61.0
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.0e-38 162.5 150 52.0
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.5e-37 159.5 179 53.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.8e-35 153.3 156 52.6
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.1e-35 152.1 129 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 9.0e-35 151.0 168 45.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.3e-33 147.1 163 45.4
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.3e-33 147.1 93 74.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-33 147.1 130 61.5
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.7e-33 146.7 130 61.5
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.2e-33 146.4 131 59.5
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 5.0e-33 145.2 82 86.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 8.4e-33 144.4 99 72.7
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-32 144.1 130 61.5
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-32 142.5 130 61.5
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.7e-21 105.1 119 54.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.7e-20 103.6 162 43.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.1e-15 86.7 86 58.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.8e-14 83.6 105 55.2
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 4.4e-13 79.0 58 63.8
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.9e-08 63.5 80 51.2
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.9e-08 63.5 180 35.6


User provided reference genes

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