Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.9e-35 151.4 76 100.0
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 6.2e-14 80.5 44 86.4
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.2e-14 80.5 44 86.4
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.2e-14 80.5 44 86.4
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.1e-13 79.7 43 86.0
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.8e-13 79.0 44 84.1
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 3.1e-13 78.2 44 84.1
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 4.0e-13 77.8 43 83.7
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 5.2e-13 77.4 44 84.1
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 5.2e-13 77.4 44 84.1
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 6.8e-13 77.0 44 81.8
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.2e-12 76.3 44 81.8
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.2e-12 76.3 44 81.8
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-12 76.3 44 81.8
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.0e-12 75.5 43 79.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.0e-12 75.5 44 81.8
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.0e-12 75.5 44 84.1
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.6e-12 75.1 44 79.5
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.4e-12 74.3 44 81.8
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.8e-12 73.9 42 81.0
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 5.8e-12 73.9 44 79.5
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 5.8e-12 73.9 44 79.5
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 7.6e-12 73.6 44 79.5
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 7.6e-12 73.6 44 79.5
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 9.9e-12 73.2 44 79.5
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.3e-11 72.8 44 79.5
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-11 72.8 44 79.5
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.3e-11 72.8 44 79.5
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-11 72.8 44 79.5
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.7e-11 72.4 44 79.5
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.7e-11 72.4 44 77.3
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.7e-11 72.4 44 77.3
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.7e-11 72.4 44 77.3
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.7e-11 72.4 43 76.7
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.7e-11 72.4 44 77.3
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.7e-11 72.4 43 79.1
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.7e-11 72.4 43 76.7
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.2e-11 72.0 44 77.3
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.2e-11 72.0 44 77.3
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.9e-11 71.6 44 77.3
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.9e-11 71.6 44 77.3
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 2.9e-11 71.6 43 79.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 3.8e-11 71.2 44 77.3
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 4.9e-11 70.9 44 77.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 6.4e-11 70.5 42 78.6
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.4e-11 70.5 37 86.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 6.4e-11 70.5 44 70.5
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 6.4e-11 70.5 44 75.0
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.1e-10 69.7 46 73.9
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.1e-10 69.7 44 72.7
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.1e-10 69.7 39 76.9
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.1e-10 69.7 44 72.7
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-10 69.7 44 72.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-10 69.7 44 72.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.4e-10 69.3 44 75.0
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.4e-10 69.3 44 75.0
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.4e-10 69.3 44 75.0
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.4e-10 69.3 43 76.7
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.9e-10 68.9 44 72.7
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 1.9e-10 68.9 43 72.1
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-10 68.9 42 78.6
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.9e-10 68.9 42 78.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.9e-10 68.9 44 75.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.4e-10 68.6 44 72.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.2e-10 68.2 44 72.7
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.2e-10 68.2 44 70.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.1e-10 67.8 44 70.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.1e-10 67.8 44 70.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 5.4e-10 67.4 44 72.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 5.4e-10 67.4 46 73.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 5.4e-10 67.4 46 73.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.1e-10 67.0 40 77.5
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.1e-10 67.0 44 72.7
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 9.2e-10 66.6 43 72.1
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 9.2e-10 66.6 43 72.1
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 9.2e-10 66.6 44 68.2
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.2e-09 66.2 44 68.2
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.2e-09 66.2 43 72.1
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.2e-09 66.2 41 73.2
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.2e-09 66.2 38 81.6
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.6e-09 65.9 36 83.3
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 1.6e-09 65.9 39 74.4
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.1e-09 65.5 43 69.8
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 2.1e-09 65.5 39 82.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.1e-09 65.5 44 70.5
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 2.1e-09 65.5 42 71.4
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 2.7e-09 65.1 39 76.9
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.5e-09 64.7 39 76.9
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.5e-09 64.7 46 71.7
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.5e-09 64.7 46 71.7
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 4.6e-09 64.3 43 69.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 4.6e-09 64.3 44 72.7
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 6.0e-09 63.9 39 76.9
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 7.8e-09 63.5 37 75.7
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 7.8e-09 63.5 38 78.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 7.8e-09 63.5 39 71.8
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.0e-08 63.2 37 73.0
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.3e-08 62.8 37 75.7
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.3e-08 62.8 43 69.8
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.3e-08 62.8 45 68.9
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.3e-08 62.8 39 74.4
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.7e-08 62.4 32 84.4
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.3e-08 62.0 40 72.5
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.3e-08 62.0 39 74.4
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.3e-08 62.0 44 75.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.0e-08 61.6 44 63.6
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 3.0e-08 61.6 44 63.6
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.9e-08 61.2 44 63.6
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 5.1e-08 60.8 44 63.6
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.7e-08 60.1 33 81.8
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.7e-08 60.1 34 79.4
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.7e-08 60.1 34 79.4
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.1e-07 59.7 44 63.6
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.1e-07 59.7 44 70.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.1e-07 59.7 38 71.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-07 59.3 40 70.0
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.5e-07 59.3 40 70.0
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.9e-07 58.9 27 96.3
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.3e-07 58.2 45 64.4
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 3.3e-07 58.2 40 70.0
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 3.3e-07 58.2 40 70.0
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 3.3e-07 58.2 40 70.0
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 4.3e-07 57.8 44 68.2
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 5.6e-07 57.4 42 61.9
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 5.6e-07 57.4 45 62.2
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 5.6e-07 57.4 42 64.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 7.3e-07 57.0 42 61.9
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 7.3e-07 57.0 42 61.9
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 7.3e-07 57.0 42 61.9
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 7.3e-07 57.0 42 61.9
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 7.3e-07 57.0 42 61.9
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 7.3e-07 57.0 36 69.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.6e-06 55.8 67 50.7
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-06 55.1 45 62.2


User provided reference genes

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