Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g20739_MAGBIO Magnolia biondii HOM05D046140 ORTHO05D000388 1.9e-101 372.5 183 100.0
MBI04_g44356_MAGBIO Magnolia biondii HOM05D046140 ORTHO05D000388 9.9e-34 147.5 142 62.7
MBI04_g46282_MAGBIO Magnolia biondii HOM05D000562 ORTHO05D000388 6.7e-30 134.8 171 49.1
TWI15G1151 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 5.3e-11 72.0 69 52.2
TWI15G1174 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 5.3e-11 72.0 69 52.2
GSVIVG01013267001 Vitis vinifera HOM05D000562 ORTHO05D000388 7.7e-10 68.2 59 55.9
Sabra01G0118600 Salix brachista HOM05D000562 ORTHO05D000388 1.7e-09 67.0 145 37.9
TAR374G0246 Trochodendron aralioides HOM05D000562 ORTHO05D000388 2.2e-09 66.6 154 33.1
Hma1.2p1_0414F.1_g147540 Hydrangea macrophylla HOM05D000562 ORTHO05D000388 2.9e-09 66.2 61 54.1
Nn1g00696 Nelumbo nucifera HOM05D000562 ORTHO05D000388 8.5e-09 64.7 59 49.2
TAR375G1124 Trochodendron aralioides HOM05D000562 ORTHO05D000388 8.5e-09 64.7 60 53.3
CiPaw.11G085700 Carya illinoinensis HOM05D000562 ORTHO05D000388 1.1e-08 64.3 61 52.5
CDE02G3756 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 1.1e-08 64.3 59 55.9
CDE11G0202 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 1.1e-08 64.3 59 57.6
Thecc.03G236700 Theobroma cacao HOM05D000562 ORTHO05D000388 1.1e-08 64.3 69 44.9
Potri.001G148700 Populus trichocarpa HOM05D000562 ORTHO05D000388 1.4e-08 63.9 148 35.8
Actinidia25930 Actinidia chinensis HOM05D000562 ORTHO05D000388 1.9e-08 63.5 62 53.2
Lalb_Chr09g0329621 Lupinus albus HOM05D000562 ORTHO05D000388 1.9e-08 63.5 61 55.7
Psat0s1837g0040 Pisum sativum HOM05D000562 ORTHO05D000388 1.9e-08 63.5 62 56.5
QL12p007846 Quercus lobata HOM05D000562 ORTHO05D000388 1.9e-08 63.5 62 54.8
TPR.G33945 Trifolium pratense HOM05D000562 ORTHO05D000388 1.9e-08 63.5 60 53.3
Dinv28898 Davidia involucrata HOM05D000562 ORTHO05D000388 2.5e-08 63.2 60 53.3
Medtr5g013770 Medicago truncatula HOM05D000562 ORTHO05D000388 2.5e-08 63.2 68 47.1
VMungo0251G1678 Vigna mungo HOM05D000562 ORTHO05D000388 2.5e-08 63.2 61 54.1
Haze_08323 Corylus avellana HOM05D000562 ORTHO05D000388 3.2e-08 62.8 62 51.6
Dinv43593 Davidia involucrata HOM05D000562 ORTHO05D000388 3.2e-08 62.8 56 58.9
SGA_v2.0_scaffold52G19262 Striga asiatica HOM05D000562 ORTHO05D000388 4.2e-08 62.4 62 53.2
vmacro22832 Vaccinium macrocarpon HOM05D000562 ORTHO05D000388 4.2e-08 62.4 64 53.1
Aqoxy3G02587 Aquilegia oxysepala HOM05D000562 ORTHO05D000388 5.5e-08 62.0 60 48.3
Nitab4.5_0000204g0120 Nicotiana tabacum HOM05D000562 ORTHO05D000388 5.5e-08 62.0 59 54.2
TAR375G1072 Trochodendron aralioides HOM05D000562 ORTHO05D000388 5.5e-08 62.0 60 51.7
Duzib205G0215 Durio zibethinus HOM05D000562 ORTHO05D000388 7.2e-08 61.6 69 44.9
PSO782G1847 Papaver somniferum HOM05D000562 ORTHO05D000388 7.2e-08 61.6 147 36.1
Phvul.003G227300 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 7.2e-08 61.6 61 52.5
Sabra03G0055600 Salix brachista HOM05D000562 ORTHO05D000388 7.2e-08 61.6 146 34.2
TPR.G19194 Trifolium pratense HOM05D000562 ORTHO05D000388 7.2e-08 61.6 61 52.5
Gohir.A08G161500 Gossypium hirsutum HOM05D000562 ORTHO05D000388 9.4e-08 61.2 69 47.8
Gohir.D08G181500 Gossypium hirsutum HOM05D000562 ORTHO05D000388 9.4e-08 61.2 69 47.8
Gorai.004G190400 Gossypium raimondii HOM05D000562 ORTHO05D000388 9.4e-08 61.2 69 47.8
PSO063G1774 Papaver somniferum HOM05D000562 ORTHO05D000388 9.4e-08 61.2 147 36.1
Potri.003G085700 Populus trichocarpa HOM05D000562 ORTHO05D000388 9.4e-08 61.2 145 35.9
Gohir.A09G197700 Gossypium hirsutum HOM05D000562 ORTHO05D000388 1.2e-07 60.8 69 46.4
Gohir.D09G192300 Gossypium hirsutum HOM05D000562 ORTHO05D000388 1.2e-07 60.8 69 46.4
Gorai.006G215200 Gossypium raimondii HOM05D000562 ORTHO05D000388 1.2e-07 60.8 69 46.4
Oeu034856.1 Olea europaea HOM05D000562 ORTHO05D000388 1.2e-07 60.8 57 57.9
Lj2g0021323 Lotus japonicus HOM05D000562 ORTHO05D000388 1.6e-07 60.5 69 46.4
Duzib068G0671 Durio zibethinus HOM05D000562 ORTHO05D000388 2.1e-07 60.1 160 34.4
TWI81G0034 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 2.1e-07 60.1 152 35.5
TAR629G2367 Trochodendron aralioides HOM05D000562 ORTHO05D000388 2.1e-07 60.1 58 55.2
arahy.Tifrunner.gnm1.ann1.D25GB4 Arachis hypogaea HOM05D000562 ORTHO05D000388 2.7e-07 59.7 61 50.8
arahy.Tifrunner.gnm1.ann1.FS695C Arachis hypogaea HOM05D000562 ORTHO05D000388 2.7e-07 59.7 61 50.8
Cpa.g.sc52.74 Carica papaya HOM05D000562 ORTHO05D000388 2.7e-07 59.7 56 53.6
Oeu037541.1 Olea europaea HOM05D000562 ORTHO05D000388 2.7e-07 59.7 62 53.2
Psat2g174160 Pisum sativum HOM05D000562 ORTHO05D000388 2.7e-07 59.7 60 51.7
CAN.G422.7 Capsicum annuum HOM05D000562 ORTHO05D000388 3.6e-07 59.3 59 49.2
Eucgr.D02144 Eucalyptus grandis HOM05D000562 ORTHO05D000388 3.6e-07 59.3 143 32.2
TWI60G1000 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 3.6e-07 59.3 153 34.6
Actinidia05787 Actinidia chinensis HOM05D000562 ORTHO05D000388 4.6e-07 58.9 57 52.6
Cc08_g01560 Coffea canephora HOM05D000562 ORTHO05D000388 4.6e-07 58.9 57 52.6
Glyma.01G203200 Glycine max HOM05D000562 ORTHO05D000388 4.6e-07 58.9 61 50.8
Glyma.11G039800 Glycine max HOM05D000562 ORTHO05D000388 4.6e-07 58.9 61 50.8
PGR031G2443 Punica granatum HOM05D000562 ORTHO05D000388 4.6e-07 58.9 61 47.5
VMungo1215G2894 Vigna mungo HOM05D000562 ORTHO05D000388 4.6e-07 58.9 60 50.0
arahy.Tifrunner.gnm1.ann1.01RPY8 Arachis hypogaea HOM05D000562 ORTHO05D000388 6.1e-07 58.5 56 57.1
COL.COLO4_06706 Corchorus olitorius HOM05D000562 ORTHO05D000388 6.1e-07 58.5 151 35.1
Dinv25168 Davidia involucrata HOM05D000562 ORTHO05D000388 6.1e-07 58.5 61 50.8
Manes.17G020000 Manihot esculenta HOM05D000562 ORTHO05D000388 6.1e-07 58.5 151 34.4
Nitab4.5_0001255g0070 Nicotiana tabacum HOM05D000562 ORTHO05D000388 6.1e-07 58.5 61 47.5
CSS0007413 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 7.9e-07 58.2 63 50.8
AUR62007202 Chenopodium quinoa HOM05D000562 ORTHO05D000388 1.0e-06 57.8 71 45.1
Ciclev10023758m.g Citrus clementina HOM05D000562 ORTHO05D000388 1.0e-06 57.8 56 50.0
Glyma.07G117300 Glycine max HOM05D000562 ORTHO05D000388 1.0e-06 57.8 56 53.6
Lalb_Chr05g0214141 Lupinus albus HOM05D000562 ORTHO05D000388 1.0e-06 57.8 147 33.3
Peaxi162Scf00084g00028 Petunia axillaris HOM05D000562 ORTHO05D000388 1.0e-06 57.8 61 47.5
VMungo0331G1744 Vigna mungo HOM05D000562 ORTHO05D000388 1.0e-06 57.8 56 55.4
Actinidia30950 Actinidia chinensis HOM05D000562 ORTHO05D000388 1.4e-06 57.4 57 50.9
MD06G1043700 Malus domestica HOM05D000562 ORTHO05D000388 1.4e-06 57.4 64 46.9
CsaV3_3G049670 Cucumis sativus L. HOM05D000562 ORTHO05D000388 1.8e-06 57.0 64 50.0
Glyma.17G151000 Glycine max HOM05D000562 ORTHO05D000388 1.8e-06 57.0 66 50.0
Oeu012018.1 Olea europaea HOM05D000562 ORTHO05D000388 1.8e-06 57.0 57 54.4
Phvul.010G043001 Phaseolus vulgaris HOM05D000562 ORTHO05D000388 1.8e-06 57.0 56 53.6
CSS0020038 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 2.3e-06 56.6 63 46.0
CSS0026811 Camellia sinensis var. sinensis HOM05D000562 ORTHO05D000388 2.3e-06 56.6 63 52.4
CANSAT21G0823 Cannabis sativa HOM05D000562 ORTHO05D000388 2.3e-06 56.6 150 36.0
DCAR_029508 Daucus carota HOM05D000562 ORTHO05D000388 2.3e-06 56.6 56 50.0
Glyma.03G105400 Glycine max HOM05D000562 ORTHO05D000388 2.3e-06 56.6 56 51.8
Lalb_Chr16g0379291 Lupinus albus HOM05D000562 ORTHO05D000388 2.3e-06 56.6 144 32.6
SalBow4G1438 Salvia bowleyana HOM05D000562 ORTHO05D000388 2.3e-06 56.6 57 50.9
Sed0023946 Sechium edule HOM05D000562 ORTHO05D000388 2.3e-06 56.6 56 53.6
CANSAT25G2175 Cannabis sativa HOM05D000562 ORTHO05D000388 3.0e-06 56.2 58 50.0
Ca_26023_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 3.0e-06 56.2 151 32.5
Ca_30450_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 3.0e-06 56.2 151 32.5
FAN04G2669 Fragaria x ananassa HOM05D000562 ORTHO05D000388 3.0e-06 56.2 61 45.9
FAN08G1217 Fragaria x ananassa HOM05D000562 ORTHO05D000388 3.0e-06 56.2 61 45.9
FAN13G2089 Fragaria x ananassa HOM05D000562 ORTHO05D000388 3.0e-06 56.2 61 45.9
Gohir.D12G214300 Gossypium hirsutum HOM05D000562 ORTHO05D000388 3.0e-06 56.2 61 45.9
Lalb_Chr09g0323991 Lupinus albus HOM05D000562 ORTHO05D000388 3.0e-06 56.2 63 47.6
Sopen01g035510 Solanum pennellii HOM05D000562 ORTHO05D000388 3.0e-06 56.2 57 49.1
PGSC0003DMG400026592 Solanum tuberosum HOM05D000562 ORTHO05D000388 3.0e-06 56.2 59 50.8
TWI23G0400 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 3.0e-06 56.2 56 53.6
AT4G17670 Arabidopsis thaliana HOM05D000562 ORTHO05D000388 3.9e-06 55.8 62 50.0
BcaNung00071 Brassica carinata HOM05D000562 ORTHO05D000388 3.9e-06 55.8 62 50.0
CDE11G0797 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 3.9e-06 55.8 66 45.5
Duzib138G1471 Durio zibethinus HOM05D000562 ORTHO05D000388 3.9e-06 55.8 56 51.8
Gohir.A12G211800 Gossypium hirsutum HOM05D000562 ORTHO05D000388 3.9e-06 55.8 61 45.9
TWI59G1145 Tripterygium wilfordii HOM05D000562 ORTHO05D000388 3.9e-06 55.8 56 55.4
Atru.chr5.80 Acer truncatum HOM05D000562 ORTHO05D000388 5.1e-06 55.5 57 50.9
Atru.chr9.1142 Acer truncatum HOM05D000562 ORTHO05D000388 5.1e-06 55.5 149 35.6
ECA248G0761 Erigeron canadensis HOM05D000562 ORTHO05D000388 5.1e-06 55.5 56 50.0
Gorai.008G229900 Gossypium raimondii HOM05D000562 ORTHO05D000388 5.1e-06 55.5 61 45.9
Lj4g0001416 Lotus japonicus HOM05D000562 ORTHO05D000388 5.1e-06 55.5 54 53.7
PGR042G1994 Punica granatum HOM05D000562 ORTHO05D000388 5.1e-06 55.5 67 47.8
AT5G47060 Arabidopsis thaliana HOM05D000562 ORTHO05D000388 6.7e-06 55.1 59 47.5
MSTRG.17115 Avicennia marina HOM05D000562 ORTHO05D000388 6.7e-06 55.1 55 47.3
ClCG09G012490 Citrullus lanatus HOM05D000562 ORTHO05D000388 6.7e-06 55.1 162 32.1
Manes.15G171400 Manihot esculenta HOM05D000562 ORTHO05D000388 6.7e-06 55.1 59 50.8
Nitab4.5_0000563g0020 Nicotiana tabacum HOM05D000562 ORTHO05D000388 6.7e-06 55.1 56 48.2
Nitab4.5_0004906g0010 Nicotiana tabacum HOM05D000562 ORTHO05D000388 6.7e-06 55.1 56 48.2
Prupe.5G050400 Prunus persica HOM05D000562 ORTHO05D000388 6.7e-06 55.1 63 46.0
AL8G11170 Arabidopsis lyrata HOM05D000562 ORTHO05D000388 8.8e-06 54.7 59 47.5
Ca_22035_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 8.8e-06 54.7 61 52.5
Ca_29703_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 8.8e-06 54.7 61 52.5
Lj2A250T15 Lonicera japonica HOM05D000562 ORTHO05D000388 8.8e-06 54.7 59 47.5
Lalb_Chr05g0220731 Lupinus albus HOM05D000562 ORTHO05D000388 8.8e-06 54.7 61 45.9
Oeu037420.1 Olea europaea HOM05D000562 ORTHO05D000388 8.8e-06 54.7 56 50.0
PGSC0003DMG400001688 Solanum tuberosum HOM05D000562 ORTHO05D000388 8.8e-06 54.7 57 49.1


User provided reference genes

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