Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 0.0e+00 1078.5 537 100.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 3.3e-194 682.2 549 65.6
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.2e-193 680.2 542 66.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 9.6e-178 627.5 539 61.2
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 9.0e-176 620.9 548 62.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 2.6e-175 619.4 547 60.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.6e-175 619.4 542 60.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.6e-175 619.4 542 60.7
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.6e-175 619.4 543 61.1
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 5.8e-175 618.2 544 60.7
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.2e-174 616.3 553 58.8
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 6.0e-172 608.2 538 60.0
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.9e-170 603.2 546 59.7
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 5.6e-170 601.7 547 58.7
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 9.6e-170 600.9 560 59.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-169 600.5 536 60.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 6.2e-169 598.2 540 58.3
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.8e-168 596.7 543 59.3
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 2.4e-168 596.3 555 58.7
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 3.1e-168 595.9 546 59.7
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 5.3e-168 595.1 548 59.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 6.9e-168 594.7 556 57.9
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.3e-166 590.5 540 59.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 2.5e-165 586.3 541 57.7
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.7e-164 582.8 536 58.8
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.3e-163 580.5 540 58.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.8e-163 580.1 544 57.5
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.1e-162 577.4 545 57.8
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 3.3e-162 575.9 545 56.7
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.6e-161 573.5 537 58.8
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.8e-161 572.8 540 56.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.1e-160 570.9 538 56.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.4e-160 570.5 543 58.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.4e-160 569.7 538 55.9
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 4.1e-160 568.9 544 56.4
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.9e-158 562.8 538 56.1
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.8e-158 562.4 550 56.7
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.4e-157 560.5 544 55.7
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 4.2e-157 558.9 543 56.4
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 9.3e-157 557.8 547 56.9
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.2e-156 557.4 541 56.7
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 6.1e-156 555.1 518 54.8
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 6.7e-155 551.6 545 56.3
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.5e-154 550.4 546 56.6
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.4e-154 548.1 555 53.9
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.8e-153 546.2 554 54.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.3e-153 545.0 547 53.4
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 8.2e-153 544.7 554 54.5
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 8.2e-153 544.7 559 54.6
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.4e-152 543.9 554 54.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 2.4e-152 543.1 554 53.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 4.1e-152 542.3 550 54.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.5e-151 540.4 549 52.6
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.5e-151 540.4 558 52.3
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 2.6e-151 539.7 551 54.4
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.6e-151 539.7 539 54.5
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.4e-151 539.3 552 53.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.3e-150 537.3 544 53.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.7e-150 537.0 554 53.1
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.0e-150 535.4 542 54.1
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.5e-150 534.6 547 54.1
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.9e-149 533.5 555 52.6
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.2e-148 530.8 540 53.9
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 2.1e-148 530.0 552 53.6
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 3.6e-148 529.3 544 53.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.1e-148 528.5 544 53.9
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 7.9e-148 528.1 547 53.7
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 3.0e-147 526.2 550 52.0
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.0e-147 526.2 564 51.8
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-146 524.2 552 51.8
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.5e-146 523.9 554 51.4
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.5e-146 523.1 546 53.3
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 5.7e-146 521.9 554 51.6
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 5.7e-146 521.9 608 49.3
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.4e-144 516.5 540 54.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.1e-144 515.8 550 53.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 5.3e-144 515.4 541 52.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 5.3e-144 515.4 552 50.7
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.3e-144 515.4 561 50.4
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 6.9e-144 515.0 546 52.7
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.5e-143 513.8 556 51.3
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.9e-143 511.9 540 53.7
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 5.9e-143 511.9 493 55.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.2e-142 510.0 538 53.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 6.5e-142 508.4 550 53.5
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.5e-141 505.4 553 50.6
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 7.2e-141 505.0 555 52.1
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.1e-140 503.4 575 49.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.4e-139 500.7 547 51.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.3e-139 500.0 558 51.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.5e-138 497.3 498 55.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.2e-137 493.4 545 51.7
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.7e-137 492.7 560 50.4
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-136 491.1 552 50.2
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.2e-135 487.6 571 49.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.6e-135 486.5 617 47.5
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.5e-135 485.7 551 51.0
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 4.5e-135 485.7 513 50.1
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.8e-134 482.6 596 46.8
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.1e-133 481.1 539 49.9
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.5e-133 480.7 479 56.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.2e-133 479.2 555 50.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.7e-132 476.5 520 51.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.0e-131 473.0 512 50.0
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 6.7e-131 471.9 450 56.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 4.4e-130 469.2 472 52.1
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.7e-129 467.2 532 47.2
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.4e-128 464.2 541 48.2
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.1e-128 463.0 530 48.7
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-128 462.2 574 45.1
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.3e-128 462.2 574 45.1
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-126 457.6 572 46.2
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.7e-126 457.2 469 51.0
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-125 454.5 555 47.7
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.1e-124 450.3 520 49.8
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 4.0e-123 446.0 496 51.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.6e-122 443.4 551 48.3
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.7e-121 439.5 531 46.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.1e-120 436.4 557 47.8
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.7e-119 433.3 493 46.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-119 433.3 555 43.8
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.0e-115 421.4 551 44.5
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 7.5e-114 415.2 505 46.7
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.3e-113 414.5 448 55.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 6.8e-107 392.1 464 50.9
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.2e-105 387.1 301 69.1
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 2.3e-102 377.1 323 61.3
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.6e-100 369.8 472 48.7
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 4.7e-100 369.4 550 41.8
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 5.8e-98 362.5 360 52.8
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 5.8e-98 362.5 505 44.6
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 5.4e-96 355.9 334 56.6
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.9e-85 320.9 702 33.0
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.5e-85 320.5 609 36.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 1.7e-81 307.8 459 43.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.4e-80 304.7 629 35.6
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.9e-73 279.6 143 100.0
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.4e-67 261.5 166 68.7
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 6.2e-52 209.5 392 39.0
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.0e-46 190.7 279 44.1
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.9e-45 188.0 192 46.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 3.4e-42 177.2 256 43.0
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.5e-40 171.0 178 57.3
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 6.7e-38 162.9 144 60.4
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.5e-37 161.8 98 71.4
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 5.7e-37 159.8 151 60.3
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-27 129.0 90 68.9
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.3e-27 126.7 162 46.3
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 6.5e-25 119.8 166 39.2
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.5e-24 117.9 131 51.9
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 2.7e-23 114.4 247 30.8
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.3e-22 111.3 135 45.9
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.3e-19 100.1 91 62.6
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.2e-17 94.7 68 61.8
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 8.5e-17 92.8 99 45.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.2e-09 68.2 39 76.9


User provided reference genes

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