Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g17292_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 9.9e-83 310.1 156 100.0
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 2.7e-64 248.8 175 77.1
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.1e-24 116.3 181 42.0
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 1.1e-20 104.0 153 42.5
CDE05G2808 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 3.1e-20 102.4 163 38.0
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.9e-17 93.2 172 40.1
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 2.5e-17 92.8 143 45.5
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 2.1e-16 89.7 181 34.3
Nitab4.5_0000165g0040 Nicotiana tabacum HOM05D002350 ORTHO05D000091 5.2e-15 85.1 163 37.4
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 6.7e-15 84.7 169 35.5
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 6.7e-15 84.7 184 33.7
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 1.5e-14 83.6 189 33.9
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.0e-14 83.2 170 34.1
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 2.6e-14 82.8 159 34.6
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 3.3e-14 82.4 210 31.4
MD15G1195400 Malus domestica HOM05D002350 ORTHO05D000091 3.3e-14 82.4 169 32.5
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 3.3e-14 82.4 199 32.7
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 5.7e-14 81.6 186 35.5
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 7.4e-14 81.3 180 35.6
Hund28809 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.3e-13 80.5 156 34.6
Hund28811 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.3e-13 80.5 156 34.6
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.7e-13 80.1 94 47.9
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.2e-13 79.7 169 37.3
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 2.2e-13 79.7 202 32.2
CAN.G160.39 Capsicum annuum HOM05D002350 ORTHO05D000091 2.8e-13 79.3 155 38.7
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 3.7e-13 79.0 202 32.7
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 3.7e-13 79.0 152 36.2
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 4.8e-13 78.6 175 33.1
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 4.8e-13 78.6 155 33.5
Rhsim01G0145900 Rhododendron simsii HOM05D000449 ORTHO05D023102 4.8e-13 78.6 152 37.5
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 6.3e-13 78.2 185 34.6
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 8.2e-13 77.8 201 31.3
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 1.1e-12 77.4 124 43.5
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 1.4e-12 77.0 147 33.3
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 1.4e-12 77.0 144 37.5
Aqoxy6G02291 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 4.1e-12 75.5 67 52.2
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 4.1e-12 75.5 191 31.9
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 5.3e-12 75.1 192 29.7
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 7.0e-12 74.7 64 53.1
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 7.0e-12 74.7 76 48.7
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 9.1e-12 74.3 65 52.3
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.2e-11 73.9 99 42.4
Nitab4.5_0001354g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.2e-11 73.9 205 31.7
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 1.2e-11 73.9 97 40.2
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 2.0e-11 73.2 184 31.5
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 2.0e-11 73.2 99 42.4
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 2.6e-11 72.8 185 34.1
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 3.5e-11 72.4 158 31.6
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.9e-11 71.6 99 41.4
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 7.7e-11 71.2 193 31.1
CSS0047158 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.7e-11 71.2 85 45.9
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 7.7e-11 71.2 113 40.7
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.0e-10 70.9 180 33.9
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 1.0e-10 70.9 90 43.3
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.3e-10 70.5 193 31.1
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 1.3e-10 70.5 63 50.8
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 1.3e-10 70.5 205 31.7
Sopen06g017060 Solanum pennellii HOM05D002350 ORTHO05D000091 2.2e-10 69.7 205 31.2
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-10 68.9 63 49.2
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-10 68.9 63 49.2
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 3.8e-10 68.9 63 49.2
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 5.0e-10 68.6 113 38.9
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 5.0e-10 68.6 185 31.4
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.0e-10 68.6 115 44.3
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 6.5e-10 68.2 95 43.2
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 8.5e-10 67.8 154 32.5
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 8.5e-10 67.8 150 32.0
Rhsim01G0146500 Rhododendron simsii HOM05D026357 ORTHO05D023102 8.5e-10 67.8 165 33.9
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 1.1e-09 67.4 231 26.4
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 1.5e-09 67.0 80 42.5
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.5e-09 67.0 109 35.8
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.9e-09 66.6 163 30.7
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 1.9e-09 66.6 63 47.6
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 1.9e-09 66.6 118 37.3
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 2.5e-09 66.2 111 40.5
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 2.5e-09 66.2 63 49.2
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 3.2e-09 65.9 86 47.7
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 4.2e-09 65.5 160 31.2
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 5.5e-09 65.1 85 44.7
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 7.2e-09 64.7 114 36.0
MBI04_g17293_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 7.2e-09 64.7 38 84.2
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 9.4e-09 64.3 78 46.2
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 1.2e-08 63.9 150 38.0
RcHm_v2.0_Chr4g0418181 Rosa chinensis HOM05D002350 ORTHO05D000091 1.2e-08 63.9 62 48.4
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 2.1e-08 63.2 167 29.9
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 2.1e-08 63.2 64 48.4
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 2.1e-08 63.2 63 47.6
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 2.7e-08 62.8 105 38.1
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 2.7e-08 62.8 112 36.6
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 2.7e-08 62.8 153 32.0
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 2.7e-08 62.8 76 46.1
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 3.6e-08 62.4 80 38.8
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 3.6e-08 62.4 92 39.1
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 3.6e-08 62.4 80 45.0
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 4.7e-08 62.0 87 39.1
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 4.7e-08 62.0 55 52.7
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 6.1e-08 61.6 92 38.0
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 8.0e-08 61.2 68 51.5
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 8.0e-08 61.2 124 35.5
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.4e-07 60.5 73 46.6
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 1.4e-07 60.5 114 34.2
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 1.4e-07 60.5 98 40.8
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 1.8e-07 60.1 92 38.0
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 1.8e-07 60.1 62 45.2
Peaxi162Scf00824g00114 Petunia axillaris HOM05D002350 ORTHO05D000091 1.8e-07 60.1 215 27.9
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 2.3e-07 59.7 166 33.1
A07p00720 Brassica napus HOM05D002350 ORTHO05D000091 2.3e-07 59.7 154 28.6
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 2.3e-07 59.7 154 28.6
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 4.0e-07 58.9 91 37.4
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 6.7e-07 58.2 90 38.9
Os01g0198100 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 6.7e-07 58.2 82 35.4
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 1.2e-06 57.4 62 43.5
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.2e-06 57.4 76 36.8
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 1.2e-06 57.4 113 36.3
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.5e-06 57.0 71 42.3
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 1.5e-06 57.0 121 33.9
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 2.0e-06 56.6 121 33.9
BolC8t51797H Brassica oleracea HOM05D002350 ORTHO05D000091 2.0e-06 56.6 121 33.9
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 2.0e-06 56.6 211 25.6
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 3.3e-06 55.8 129 33.3
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 4.4e-06 55.5 64 43.8
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 4.4e-06 55.5 121 33.1
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 4.4e-06 55.5 64 43.8
Zm00001eb088530 Zea mays HOM05D054927 ORTHO05D000091 4.4e-06 55.5 70 41.4
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 5.7e-06 55.1 185 27.0
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 5.7e-06 55.1 112 33.9
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 5.7e-06 55.1 124 29.8
A01p33770 Brassica napus HOM05D002350 ORTHO05D000091 7.5e-06 54.7 83 38.6
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 9.7e-06 54.3 166 27.7


User provided reference genes

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