Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.9e-59 232.6 150 100.0
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 6.4e-55 217.6 145 91.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.8e-28 129.8 150 52.7
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 2.6e-24 115.9 157 47.8
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 3.8e-23 112.1 153 47.1
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 8.4e-23 110.9 166 49.4
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.4e-22 110.2 168 46.4
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 1.4e-22 110.2 156 46.8
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 2.5e-22 109.4 186 42.5
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 2.1e-21 106.3 156 46.8
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 2.7e-21 105.9 157 47.1
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 2.7e-21 105.9 163 45.4
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 3.5e-21 105.5 153 50.3
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 3.5e-21 105.5 149 47.0
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.9e-21 104.4 159 45.9
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 7.9e-21 104.4 139 51.1
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.9e-21 104.4 114 55.3
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.0e-20 104.0 153 45.1
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.0e-20 104.0 170 46.5
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 1.3e-20 103.6 154 50.6
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 1.8e-20 103.2 112 57.1
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 1.9e-19 99.8 155 45.2
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 9.7e-19 97.4 172 41.9
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 9.7e-19 97.4 131 46.6
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.3e-18 97.1 148 44.6
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 1.6e-18 96.7 112 57.1
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 2.8e-18 95.9 157 45.2
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.8e-18 95.9 137 48.2
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 3.7e-18 95.5 102 58.8
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 6.3e-18 94.7 164 42.7
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 8.2e-18 94.4 125 49.6
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 1.1e-17 94.0 164 42.7
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 1.1e-17 94.0 164 42.7
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-17 94.0 155 43.2
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 1.4e-17 93.6 170 42.4
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.4e-17 92.8 148 50.7
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 3.1e-17 92.4 124 49.2
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 5.3e-17 91.7 115 52.2
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.3e-17 91.7 112 54.5
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 6.9e-17 91.3 152 43.4
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.0e-17 90.9 155 42.6
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 1.2e-16 90.5 103 52.4
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 1.5e-16 90.1 85 63.5
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 2.6e-16 89.4 105 53.3
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 3.4e-16 89.0 168 38.7
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 3.4e-16 89.0 128 45.3
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 4.5e-16 88.6 97 57.7
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.9e-16 88.2 91 59.3
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 5.9e-16 88.2 163 42.9
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 5.9e-16 88.2 130 43.1
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 7.6e-16 87.8 150 42.7
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.0e-15 87.4 123 49.6
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 2.2e-15 86.3 123 49.6
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 2.2e-15 86.3 150 42.0
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 2.2e-15 86.3 101 54.5
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 5.0e-15 85.1 97 59.8
Cfa020171 Carpinus fangiana HOM05D003436 ORTHO05D003674 6.5e-15 84.7 114 48.2
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.5e-15 84.7 99 55.6
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 6.5e-15 84.7 84 60.7
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 8.5e-15 84.3 101 51.5
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.5e-15 84.3 155 40.6
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.1e-14 84.0 129 48.1
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.4e-14 83.6 116 46.6
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.4e-14 83.6 95 55.8
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 1.9e-14 83.2 96 56.2
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 1.9e-14 83.2 168 38.7
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 1.9e-14 83.2 106 52.8
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 2.5e-14 82.8 155 42.6
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.5e-14 82.8 168 37.5
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 2.5e-14 82.8 85 57.6
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 2.5e-14 82.8 111 50.5
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.5e-14 82.8 141 43.3
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 3.2e-14 82.4 157 42.0
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.2e-14 82.4 119 47.1
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 3.2e-14 82.4 94 54.3
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 4.2e-14 82.0 155 40.6
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 4.2e-14 82.0 156 38.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 4.2e-14 82.0 87 56.3
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.2e-14 82.0 151 43.7
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 5.5e-14 81.6 103 52.4
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 5.5e-14 81.6 106 50.9
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 7.2e-14 81.3 103 53.4
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 7.2e-14 81.3 94 54.3
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 7.2e-14 81.3 100 53.0
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 9.3e-14 80.9 92 56.5
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 9.3e-14 80.9 93 50.5
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 9.3e-14 80.9 115 47.8
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 9.3e-14 80.9 73 67.1
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 9.3e-14 80.9 107 50.5
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 9.3e-14 80.9 132 45.5
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.2e-13 80.5 128 45.3
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.2e-13 80.5 125 43.2
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 1.6e-13 80.1 159 40.9
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 1.6e-13 80.1 159 40.9
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.6e-13 80.1 168 37.5
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 1.6e-13 80.1 92 54.3
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.6e-13 80.1 84 53.6
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 2.1e-13 79.7 99 53.5
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 2.7e-13 79.3 79 54.4
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 2.7e-13 79.3 105 48.6
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 2.7e-13 79.3 101 50.5
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 3.6e-13 79.0 73 61.6
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 3.6e-13 79.0 73 61.6
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 3.6e-13 79.0 73 61.6
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 3.6e-13 79.0 73 61.6
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.6e-13 79.0 91 54.9
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 4.6e-13 78.6 145 40.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 4.6e-13 78.6 102 52.9
Zm00001eb414650 Zea mays HOM05D003436 ORTHO05D003674 4.6e-13 78.6 106 48.1
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 7.9e-13 77.8 77 62.3
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 1.0e-12 77.4 73 60.3
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.0e-12 77.4 142 40.1
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 1.4e-12 77.0 159 40.9
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 1.4e-12 77.0 159 40.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.4e-12 77.0 100 53.0
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 1.4e-12 77.0 64 67.2
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.4e-12 77.0 101 49.5
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 1.8e-12 76.6 103 47.6
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.8e-12 76.6 79 51.9
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 3.9e-12 75.5 97 50.5
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 5.1e-12 75.1 114 47.4
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 5.1e-12 75.1 90 52.2
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 6.7e-12 74.7 58 70.7
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 8.8e-12 74.3 102 53.9
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 1.5e-11 73.6 96 54.2
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 1.5e-11 73.6 96 54.2
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.5e-11 73.6 106 46.2
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.9e-11 73.2 105 48.6
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 2.5e-11 72.8 106 45.3
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.3e-11 72.4 55 74.5
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 3.3e-11 72.4 55 74.5
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 4.3e-11 72.0 129 41.1
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 4.3e-11 72.0 106 47.2
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 5.7e-11 71.6 96 51.0
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 7.4e-11 71.2 95 52.6
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 7.4e-11 71.2 147 41.5
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 1.3e-10 70.5 96 51.0
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-10 70.1 97 46.4
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 6.3e-10 68.2 93 49.5
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 8.2e-10 67.8 110 48.2
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.4e-09 67.0 79 53.2
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 1.4e-09 67.0 88 48.9
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 1.4e-09 67.0 77 54.5
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 1.8e-09 66.6 80 53.8
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.1e-09 65.9 65 55.4
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.3e-09 65.1 96 47.9
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.3e-09 65.1 88 47.7
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 6.9e-09 64.7 105 45.7
Os08g0327700 Oryza sativa ssp. japonica HOM05D003436 ORTHO05D003674 6.9e-09 64.7 154 36.4
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 9.1e-09 64.3 55 70.9
Dinv24076 Davidia involucrata HOM05D003436 ORTHO05D003674 9.1e-09 64.3 118 44.1
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 9.1e-09 64.3 82 51.2
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 9.1e-09 64.3 75 50.7
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.2e-08 63.9 89 47.2
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-08 63.2 92 50.0
ECA247G3621 Erigeron canadensis HOM05D003436 ORTHO05D003674 3.4e-08 62.4 102 47.1
Phvul.007G259400 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.4e-08 62.4 93 45.2
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.4e-08 62.4 68 52.9
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 3.4e-08 62.4 68 52.9
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.5e-08 62.0 92 50.0
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 5.9e-08 61.6 80 52.5
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.0e-07 60.8 89 46.1
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.7e-07 60.1 103 44.7
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 2.2e-07 59.7 74 51.4
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 3.8e-07 58.9 101 45.5
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 1.4e-06 57.0 42 71.4
PGR142G2110 Punica granatum HOM05D003436 ORTHO05D003674 1.9e-06 56.6 105 41.0
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 3.2e-06 55.8 91 45.1
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 3.2e-06 55.8 80 52.5
Zm00001eb308610 Zea mays HOM05D003436 ORTHO05D003674 3.2e-06 55.8 117 40.2
Atru.chr8.1104 Acer truncatum HOM05D003436 ORTHO05D003674 5.5e-06 55.1 108 39.8


User provided reference genes

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