Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 5.8e-115 417.5 208 100.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 5.7e-70 268.1 169 79.3
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 7.5e-70 267.7 168 77.4
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.3e-69 264.6 169 76.3
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 6.3e-69 264.6 169 77.5
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 8.3e-69 264.2 169 76.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.8e-68 263.1 169 76.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.4e-68 262.7 170 77.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.1e-68 262.3 170 75.9
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.1e-68 261.9 169 78.1
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 4.1e-68 261.9 171 75.4
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-68 261.9 170 77.1
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-68 261.9 170 77.1
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-68 261.9 170 77.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 5.4e-68 261.5 168 74.4
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.6e-67 260.0 156 81.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.7e-67 259.2 171 77.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 5.9e-67 258.1 170 74.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.9e-67 258.1 170 75.9
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.3e-66 256.9 171 74.9
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.9e-66 255.8 175 75.4
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.9e-66 255.8 170 74.7
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 8.6e-66 254.2 172 73.3
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.6e-66 254.2 170 73.5
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.9e-65 253.1 171 74.9
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.9e-65 253.1 170 74.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.5e-65 252.7 170 75.3
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 3.3e-65 252.3 170 74.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 5.5e-65 251.5 175 70.9
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.5e-65 251.5 168 75.6
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 7.2e-65 251.1 171 73.1
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 7.2e-65 251.1 168 75.0
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 9.5e-65 250.8 178 71.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 9.5e-65 250.8 171 73.7
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.6e-64 250.0 172 73.8
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.6e-64 250.0 178 70.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.1e-64 249.6 156 78.2
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.1e-64 249.6 168 73.2
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.1e-64 249.6 171 71.9
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.1e-64 249.6 168 73.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.1e-64 249.6 171 73.1
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.7e-64 248.4 171 72.5
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 4.7e-64 248.4 168 72.0
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.7e-64 248.4 168 73.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 6.1e-64 248.1 167 73.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.1e-64 248.1 168 74.4
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 8.0e-64 247.7 168 72.6
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 8.0e-64 247.7 175 71.4
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.0e-63 247.3 175 70.9
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-63 246.9 198 65.2
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.8e-63 246.5 175 70.3
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.3e-63 246.1 175 70.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.0e-63 245.7 168 73.8
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.0e-63 245.4 198 64.6
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.0e-63 245.4 198 64.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 8.9e-63 244.2 170 72.9
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-62 243.8 158 75.9
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.6e-62 242.7 166 73.5
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.6e-62 242.7 167 71.3
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 3.4e-62 242.3 193 66.8
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 7.5e-62 241.1 169 70.4
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 7.5e-62 241.1 168 70.8
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.3e-61 240.4 168 72.0
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.3e-61 240.4 166 68.1
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.7e-61 240.0 167 71.3
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 4.9e-61 238.4 168 69.0
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 4.9e-61 238.4 165 70.3
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.9e-61 238.4 168 72.6
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 4.9e-61 238.4 169 70.4
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 4.9e-61 238.4 169 70.4
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 6.3e-61 238.0 170 68.8
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 6.3e-61 238.0 158 75.3
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 8.3e-61 237.7 168 69.0
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.4e-60 236.9 168 69.6
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-60 236.9 168 68.5
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.4e-60 236.9 168 69.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.4e-60 236.9 168 69.0
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.8e-60 236.5 161 73.9
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.4e-60 236.1 168 68.5
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-60 236.1 168 68.5
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.4e-60 236.1 168 68.5
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 3.1e-60 235.7 168 69.0
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.1e-60 235.3 168 69.0
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 4.1e-60 235.3 168 68.5
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 4.1e-60 235.3 168 68.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.4e-60 235.0 168 68.5
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.4e-60 235.0 166 68.1
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 7.0e-60 234.6 182 67.6
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 9.2e-60 234.2 168 67.9
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.2e-59 233.8 170 67.6
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.6e-59 233.4 168 67.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.7e-59 232.6 168 67.9
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.5e-59 231.9 169 68.6
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.0e-58 230.7 168 66.7
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.3e-58 230.3 169 67.5
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.3e-58 230.3 168 67.3
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.7e-58 229.9 163 69.9
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 2.3e-58 229.6 172 67.4
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 5.0e-58 228.4 173 65.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 8.6e-58 227.6 205 58.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-57 226.5 160 68.8
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-57 226.5 160 68.8
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-57 226.5 160 68.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 4.3e-57 225.3 173 68.8
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 4.3e-57 225.3 171 64.3
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.6e-57 224.9 166 67.5
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-56 223.0 216 57.9
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.0e-55 220.7 141 74.5
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.0e-55 220.7 186 64.0
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.8e-54 214.9 207 57.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.7e-53 212.2 137 73.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 8.3e-53 211.1 264 46.6
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.6e-51 206.8 184 62.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 8.6e-50 201.1 224 50.0
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.1e-48 196.4 118 78.8
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.9e-45 186.0 172 57.0
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 6.4e-45 184.9 166 55.4
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 5.4e-44 181.8 169 59.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 6.6e-42 174.9 110 72.7
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.3e-39 166.4 113 70.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.2e-39 165.2 109 74.3
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 3.2e-36 156.0 139 53.2
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.3e-34 149.8 158 46.8
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.1e-33 147.5 95 72.6
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.1e-33 147.5 119 65.5
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 5.6e-33 145.2 112 62.5
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 4.7e-32 142.1 105 66.7
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.4e-31 140.6 113 57.5
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.6e-30 134.8 107 65.4
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.9e-29 132.9 112 59.8
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 5.6e-25 118.6 99 61.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.6e-24 117.1 110 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 6.2e-24 115.2 112 45.5
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.1e-23 114.4 100 60.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 6.9e-23 111.7 79 65.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 6.9e-23 111.7 79 65.8
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.6e-22 109.8 79 74.7
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-22 109.8 61 85.2
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.7e-21 107.1 114 45.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-20 104.0 99 54.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.2e-19 100.9 63 74.6
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.5e-19 99.4 60 78.3
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.6e-19 99.0 82 63.4
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.3e-18 97.4 99 51.5
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.6e-18 95.1 106 44.3
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-17 93.2 61 70.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.6e-16 90.5 93 48.4
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 8.1e-16 88.2 136 39.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.8e-14 82.0 111 45.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 8.4e-13 78.2 47 76.6
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.6e-06 56.6 47 63.8
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 9.9e-06 54.7 34 79.4


User provided reference genes

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