Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.0e-147 524.2 283 100.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.3e-112 407.9 278 81.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 7.7e-110 401.0 278 80.6
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.7e-109 399.8 278 80.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.2e-109 399.4 278 79.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.5e-109 397.5 283 79.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.1e-108 397.1 278 79.1
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.5e-108 396.7 278 79.9
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.5e-108 396.0 278 79.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.2e-108 395.6 278 80.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 3.2e-108 395.6 277 79.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 5.5e-108 394.8 278 80.2
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 5.5e-108 394.8 283 77.7
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 7.2e-108 394.4 278 78.8
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 9.4e-108 394.0 278 79.5
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 9.4e-108 394.0 278 79.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 9.4e-108 394.0 278 79.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 9.4e-108 394.0 278 79.5
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.2e-107 393.7 278 78.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.6e-107 393.3 278 79.9
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.1e-107 392.9 278 78.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.1e-107 392.9 283 78.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.1e-107 392.9 278 79.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.7e-107 392.5 278 79.1
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.6e-107 392.1 278 79.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.6e-107 392.1 278 78.8
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.7e-107 391.7 278 78.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.7e-107 391.7 278 78.8
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.7e-107 391.7 278 79.5
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 4.7e-107 391.7 278 78.4
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.7e-107 391.7 278 79.1
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 6.1e-107 391.3 278 77.7
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 6.1e-107 391.3 278 78.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 8.0e-107 391.0 278 77.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 8.0e-107 391.0 278 78.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 8.0e-107 391.0 278 78.4
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.0e-106 390.6 283 76.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.0e-106 390.6 278 79.1
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.0e-106 390.6 278 78.8
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.4e-106 390.2 278 77.7
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.4e-106 390.2 278 79.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.8e-106 389.8 278 78.4
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.8e-106 389.8 278 78.4
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.8e-106 389.8 278 77.7
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.8e-106 389.8 278 77.7
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-106 389.4 278 77.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 4.0e-106 388.7 278 78.8
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 5.2e-106 388.3 278 79.1
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 8.8e-106 387.5 275 77.8
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 8.8e-106 387.5 277 78.0
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.8e-106 387.5 278 79.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 8.8e-106 387.5 278 78.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.5e-105 386.7 263 83.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.5e-105 386.7 278 77.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.5e-105 386.7 278 77.3
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.6e-105 386.0 283 75.6
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.3e-105 385.6 275 77.5
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.4e-105 385.2 278 76.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 5.7e-105 384.8 278 77.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 7.5e-105 384.4 278 77.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 7.5e-105 384.4 262 82.1
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 7.5e-105 384.4 278 77.7
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 9.7e-105 384.0 278 77.3
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.3e-104 383.6 278 77.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.3e-104 383.6 278 76.3
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 1.7e-104 383.3 279 77.1
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.7e-104 383.3 278 78.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 2.8e-104 382.5 280 78.2
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.8e-104 382.5 278 77.7
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 4.8e-104 381.7 284 76.4
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.8e-104 381.7 278 78.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 6.3e-104 381.3 283 76.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.4e-103 379.4 279 77.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 4.1e-103 378.6 278 78.4
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.1e-103 378.6 278 76.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 9.1e-103 377.5 276 77.2
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 9.1e-103 377.5 276 77.2
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 9.1e-103 377.5 276 77.2
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-101 372.5 323 67.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.5e-100 368.2 267 77.2
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 9.4e-100 367.5 319 68.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 9.4e-100 367.5 278 71.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.6e-99 366.7 278 72.3
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.7e-99 365.9 262 78.2
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 4.7e-99 365.2 322 67.4
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.3e-98 362.8 281 73.7
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 5.2e-98 361.7 283 73.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 8.8e-98 360.9 278 74.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.0e-97 359.8 279 73.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.6e-97 359.4 275 70.2
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 4.4e-97 358.6 271 76.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.7e-96 356.7 275 74.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-96 356.7 354 59.9
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.2e-96 356.3 319 63.6
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 4.8e-96 355.1 279 71.3
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.4e-95 351.7 256 78.5
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 9.1e-95 350.9 274 73.0
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.7e-94 349.4 276 71.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-93 345.9 263 74.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.8e-93 345.5 279 71.0
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.8e-93 345.5 278 71.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 8.6e-93 344.4 252 77.8
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 8.0e-91 337.8 270 68.9
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-90 337.4 305 66.2
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.8e-90 336.7 252 74.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 5.7e-89 331.6 276 70.3
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 5.4e-87 325.1 264 70.5
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.7e-85 320.1 276 63.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.1e-84 317.4 231 78.8
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.3e-84 315.8 272 68.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.3e-84 315.8 272 68.4
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 5.6e-84 315.1 278 64.0
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 8.0e-83 311.2 272 65.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 5.2e-82 308.5 246 73.6
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-81 307.4 223 79.4
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 9.2e-79 297.7 223 76.2
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.3e-77 293.1 284 59.9
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.5e-76 290.4 286 59.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-73 278.9 275 62.2
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.4e-73 278.9 275 56.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-72 275.4 275 61.8
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 9.5e-68 261.2 280 56.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.6e-61 238.4 209 66.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 9.5e-60 234.6 286 50.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-57 227.6 138 87.7
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.9e-56 222.2 275 49.8
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.7e-54 216.5 132 86.4
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.5e-52 210.7 203 65.0
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.5e-49 200.7 167 70.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.0e-46 188.7 162 62.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.8e-43 179.9 300 42.7
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.6e-43 179.5 120 75.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.1e-42 176.4 106 85.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 6.9e-42 175.3 97 92.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.6e-41 173.3 90 98.9
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 3.7e-35 152.9 81 93.8
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.5e-33 146.0 145 57.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-29 134.4 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.3e-29 134.4 74 91.9
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 5.1e-29 132.5 80 83.8
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 5.6e-28 129.0 80 77.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-20 104.4 130 53.1
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 6.9e-18 95.5 156 43.6
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.6e-17 93.6 141 46.1
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.5e-17 92.8 57 78.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 5.9e-17 92.4 153 37.9
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.0e-16 91.7 146 40.4
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 2.2e-16 90.5 156 41.0
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.9e-16 90.1 73 71.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 8.5e-16 88.6 272 30.9
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.5e-15 85.9 93 64.5
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.5e-15 85.9 152 38.2
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.1e-14 82.4 70 65.7
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-13 80.9 93 59.1
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.0e-13 80.1 155 36.8
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.3e-12 76.3 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 2.8e-11 73.6 73 57.5
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.7e-11 73.2 43 81.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-09 67.8 339 26.8
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.4e-09 66.6 149 36.9
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.2e-06 58.2 138 38.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 2.1e-06 57.4 60 53.3


User provided reference genes

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