Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g12225_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D000647 1.8e-53 212.2 99 100.0
Aqoxy3G01899 Aquilegia oxysepala HOM05D000452 ORTHO05D000647 1.0e-45 186.4 92 93.5
Nn3g21160 Nelumbo nucifera HOM05D000452 ORTHO05D000647 1.0e-45 186.4 92 92.4
Dinv22846 Davidia involucrata HOM05D000452 ORTHO05D000647 2.3e-45 185.3 92 92.4
MSTRG.11892 Avicennia marina HOM05D000452 ORTHO05D000647 5.2e-45 184.1 91 92.3
CSS0037620 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D000647 5.2e-45 184.1 92 91.3
Dinv29057 Davidia involucrata HOM05D000452 ORTHO05D000647 5.2e-45 184.1 92 92.4
ATR0829G092 Amborella trichopoda HOM05D000452 ORTHO05D000647 6.8e-45 183.7 92 93.5
COL.COLO4_16876 Corchorus olitorius HOM05D000452 ORTHO05D000647 8.8e-45 183.3 92 91.3
MELO3C013803.2 Cucumis melo HOM05D000452 ORTHO05D000647 8.8e-45 183.3 91 92.3
CsaV3_3G001130 Cucumis sativus L. HOM05D000452 ORTHO05D000647 8.8e-45 183.3 91 92.3
Rhsim07G0137200 Rhododendron simsii HOM05D000452 ORTHO05D000647 8.8e-45 183.3 92 91.3
Thecc.03G315300 Theobroma cacao HOM05D000452 ORTHO05D000647 8.8e-45 183.3 92 91.3
Atru.chr6.1504 Acer truncatum HOM05D000452 ORTHO05D000647 1.2e-44 183.0 91 92.3
arahy.Tifrunner.gnm1.ann1.F8M8GF Arachis hypogaea HOM05D000452 ORTHO05D000647 1.2e-44 183.0 91 92.3
arahy.Tifrunner.gnm1.ann1.NTSV8G Arachis hypogaea HOM05D000452 ORTHO05D000647 1.2e-44 183.0 91 92.3
HanXRQChr03g0081941 Helianthus annuus HOM05D000452 ORTHO05D000647 1.2e-44 183.0 91 92.3
Gohir.D03G177600 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.5e-44 182.6 92 90.2
Gorai.003G186900 Gossypium raimondii HOM05D000452 ORTHO05D000647 1.5e-44 182.6 92 90.2
Lalb_Chr16g0380841 Lupinus albus HOM05D000452 ORTHO05D000647 1.5e-44 182.6 92 91.3
Oeu061084.1 Olea europaea HOM05D000452 ORTHO05D000647 1.5e-44 182.6 91 91.2
CANSAT25G3050 Cannabis sativa HOM05D000452 ORTHO05D000647 2.6e-44 181.8 91 90.1
ECA240G0452 Erigeron canadensis HOM05D000452 ORTHO05D000647 2.6e-44 181.8 91 91.2
Lalb_Chr05g0215511 Lupinus albus HOM05D000452 ORTHO05D000647 2.6e-44 181.8 91 91.2
SalBow4G2423 Salvia bowleyana HOM05D000452 ORTHO05D000647 2.6e-44 181.8 91 92.3
SGA_v2.0_scaffold89G27415 Striga asiatica HOM05D000452 ORTHO05D000647 2.6e-44 181.8 88 96.6
TAR375G0915 Trochodendron aralioides HOM05D000452 ORTHO05D000647 2.6e-44 181.8 92 91.3
PGR042G0607 Punica granatum HOM05D000452 ORTHO05D000647 3.4e-44 181.4 92 91.3
Cc08_g04360 Coffea canephora HOM05D000452 ORTHO05D000647 4.4e-44 181.0 92 89.1
Manes.17G008700 Manihot esculenta HOM05D000452 ORTHO05D000647 4.4e-44 181.0 92 90.2
TWI60G1241 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 4.4e-44 181.0 92 90.2
Duzib205G1036 Durio zibethinus HOM05D000452 ORTHO05D000647 7.5e-44 180.3 92 89.1
Gohir.A03G000016 Gossypium hirsutum HOM05D000452 ORTHO05D000647 7.5e-44 180.3 92 89.1
Lj7C162G1 Lonicera japonica HOM05D000452 ORTHO05D000647 7.5e-44 180.3 88 94.3
PSO782G4017 Papaver somniferum HOM05D000452 ORTHO05D000647 7.5e-44 180.3 92 91.3
Sed0005572 Sechium edule HOM05D000452 ORTHO05D000647 7.5e-44 180.3 91 91.2
MSTRG.1780 Avicennia marina HOM05D000452 ORTHO05D000647 9.8e-44 179.9 91 90.1
Carub.0008s0246 Capsella rubella HOM05D000452 ORTHO05D000647 9.8e-44 179.9 92 89.1
Gohir.D12G206500 Gossypium hirsutum HOM05D000452 ORTHO05D000647 9.8e-44 179.9 92 89.1
Gorai.008G221700 Gossypium raimondii HOM05D000452 ORTHO05D000647 9.8e-44 179.9 92 89.1
THA.LOC104806181 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 9.8e-44 179.9 92 89.1
AL8G13110 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 1.3e-43 179.5 92 88.0
Actinidia18149 Actinidia chinensis HOM05D000452 ORTHO05D000647 1.7e-43 179.1 92 90.2
EL10Ac5g11947 Beta vulgaris HOM05D000452 ORTHO05D000647 1.7e-43 179.1 91 90.1
CAN.G208.92 Capsicum annuum HOM05D000452 ORTHO05D000647 1.7e-43 179.1 92 88.0
Nitab4.5_0009612g0030 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.7e-43 179.1 92 88.0
Peaxi162Scf00064g01825 Petunia axillaris HOM05D000452 ORTHO05D000647 1.7e-43 179.1 92 88.0
QL12p000991 Quercus lobata HOM05D000452 ORTHO05D000647 1.7e-43 179.1 91 89.0
MD06G1014100 Malus domestica HOM05D000452 ORTHO05D000647 2.2e-43 178.7 91 91.2
Nitab4.5_0001033g0040 Nicotiana tabacum HOM05D000452 ORTHO05D000647 2.2e-43 178.7 92 85.9
Sc22g0001960 Simmondsia chinensis HOM05D000452 ORTHO05D000647 2.2e-43 178.7 91 90.1
THA.LOC104798459 Tarenaya hassleriana HOM05D000452 ORTHO05D000647 2.2e-43 178.7 92 89.1
Cfa012576 Carpinus fangiana HOM05D000452 ORTHO05D000647 2.8e-43 178.3 92 89.1
Haze_08087 Corylus avellana HOM05D000452 ORTHO05D000647 2.8e-43 178.3 92 89.1
Haze_08089 Corylus avellana HOM05D000452 ORTHO05D000647 2.8e-43 178.3 92 89.1
Migut.A00572 Erythranthe guttata HOM05D000452 ORTHO05D000647 2.8e-43 178.3 91 89.0
PSO063G5025 Papaver somniferum HOM05D000452 ORTHO05D000647 2.8e-43 178.3 92 90.2
TWI32G0229 Tripterygium wilfordii HOM05D000452 ORTHO05D000647 2.8e-43 178.3 92 88.0
BcaB07g30881 Brassica carinata HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
BcaC04g21758 Brassica carinata HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
A09p21820 Brassica napus HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
C09p27930 Brassica napus HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
BolC9t55656H Brassica oleracea HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
BraA09t37786Z Brassica rapa HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 88.0
CARHR176460 Cardamine hirsuta HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 87.0
HanXRQChr13g0404861 Helianthus annuus HOM05D000452 ORTHO05D000647 3.7e-43 177.9 91 89.0
Nitab4.5_0000738g0020 Nicotiana tabacum HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 87.0
Solyc12g096050.2 Solanum lycopersicum HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 87.0
Sopen12g031940 Solanum pennellii HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 87.0
SGA_v2.0_scaffold96G29054 Striga asiatica HOM05D000452 ORTHO05D000647 3.7e-43 177.9 92 90.2
Oeu023084.1 Olea europaea HOM05D000452 ORTHO05D000647 4.8e-43 177.6 91 89.0
RcHm_v2.0_Chr7g0213191 Rosa chinensis HOM05D000452 ORTHO05D000647 4.8e-43 177.6 91 90.1
Sp2g10460 Schrenkiella parvula HOM05D000452 ORTHO05D000647 4.8e-43 177.6 92 87.0
BolC7t45522H Brassica oleracea HOM05D000452 ORTHO05D000647 6.3e-43 177.2 92 87.0
Migut.E01339 Erythranthe guttata HOM05D000452 ORTHO05D000647 6.3e-43 177.2 91 89.0
TPR.G29130 Trifolium pratense HOM05D000452 ORTHO05D000647 6.3e-43 177.2 91 90.1
VMungo1215G1223 Vigna mungo HOM05D000452 ORTHO05D000647 6.3e-43 177.2 91 90.1
Aa31LG9G7470 Aethionema arabicum HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
BcaC09g51443 Brassica carinata HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
BcaNung04018 Brassica carinata HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
A01p11050 Brassica napus HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
C01p13070 Brassica napus HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
BolC1t01281H Brassica oleracea HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
BraA01t01052Z Brassica rapa HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
Lj2g0025287 Lotus japonicus HOM05D000452 ORTHO05D000647 8.3e-43 176.8 91 90.1
Sp7g17760 Schrenkiella parvula HOM05D000452 ORTHO05D000647 8.3e-43 176.8 92 88.0
Sed0026324 Sechium edule HOM05D000452 ORTHO05D000647 8.3e-43 176.8 91 87.9
CARHR225940 Cardamine hirsuta HOM05D000452 ORTHO05D000647 1.1e-42 176.4 92 88.0
AUR62007398 Chenopodium quinoa HOM05D000452 ORTHO05D000647 1.1e-42 176.4 88 92.0
Ah.07g201240 Amaranthus hybridus HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
BcaC06g30614 Brassica carinata HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 85.9
Carub.0007s2210 Capsella rubella HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 87.0
Cpa.g.sc24.60 Carica papaya HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 87.0
Ca_25115_v3 Cicer arietinum L. HOM05D000452 ORTHO05D000647 1.4e-42 176.0 87 94.3
DCAR_008189 Daucus carota HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 85.9
Thhalv10000794m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 87.0
FvH4_5g23810 Fragaria vesca HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
FAN04G0374 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
FAN08G2708 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
FAN18G0313 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
FAN18G4053 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 87.9
Glyma.01G147800 Glycine max HOM05D000452 ORTHO05D000647 1.4e-42 176.0 91 89.0
Gohir.A12G204100 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.4e-42 176.0 92 88.0
Gohir.A08G151100 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.8e-42 175.6 92 88.0
Gohir.D08G172300 Gossypium hirsutum HOM05D000452 ORTHO05D000647 1.8e-42 175.6 92 88.0
Gorai.004G179600 Gossypium raimondii HOM05D000452 ORTHO05D000647 1.8e-42 175.6 92 88.0
Medtr5g027200 Medicago truncatula HOM05D000452 ORTHO05D000647 1.8e-42 175.6 87 93.1
AL7G35070 Arabidopsis lyrata HOM05D000452 ORTHO05D000647 2.4e-42 175.3 92 88.0
AT4G19040 Arabidopsis thaliana HOM05D000452 ORTHO05D000647 2.4e-42 175.3 92 88.0
A03p51700 Brassica napus HOM05D000452 ORTHO05D000647 2.4e-42 175.3 92 87.0
CiPaw.12G070900 Carya illinoinensis HOM05D000452 ORTHO05D000647 2.4e-42 175.3 91 87.9
DCAR_024947 Daucus carota HOM05D000452 ORTHO05D000647 2.4e-42 175.3 92 87.0
Peaxi162Scf00408g00523 Petunia axillaris HOM05D000452 ORTHO05D000647 2.4e-42 175.3 92 83.7
Thhalv10024539m.g Eutrema salsugineum HOM05D000452 ORTHO05D000647 3.1e-42 174.9 92 87.0
BcaNung06622 Brassica carinata HOM05D000452 ORTHO05D000647 4.1e-42 174.5 96 85.4
Actinidia14754 Actinidia chinensis HOM05D000452 ORTHO05D000647 7.0e-42 173.7 92 87.0
BcaNung03084 Brassica carinata HOM05D000452 ORTHO05D000647 7.0e-42 173.7 92 87.0
C07p50190 Brassica napus HOM05D000452 ORTHO05D000647 7.0e-42 173.7 92 87.0
CiPaw.11G102100 Carya illinoinensis HOM05D000452 ORTHO05D000647 9.1e-42 173.3 91 87.9
Sabra01G0102500 Salix brachista HOM05D000452 ORTHO05D000647 1.2e-41 172.9 92 85.9
Psat0s4911g0080 Pisum sativum HOM05D000452 ORTHO05D000647 1.6e-41 172.6 87 92.0
vmacro22926 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 1.6e-41 172.6 136 65.4
Lsat_1_v5_gn_6_17581 Lactuca sativa HOM05D000452 ORTHO05D000647 2.0e-41 172.2 91 87.9
Aa31LG6G1750 Aethionema arabicum HOM05D000452 ORTHO05D000647 2.7e-41 171.8 92 84.8
Phvul.002G132000 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 2.7e-41 171.8 91 87.9
Potri.001G132900 Populus trichocarpa HOM05D000452 ORTHO05D000647 3.5e-41 171.4 92 84.8
Potri.003G100600 Populus trichocarpa HOM05D000452 ORTHO05D000647 3.5e-41 171.4 92 84.8
Sabra03G0068600 Salix brachista HOM05D000452 ORTHO05D000647 3.5e-41 171.4 92 84.8
Glyma.09G212100 Glycine max HOM05D000452 ORTHO05D000647 4.5e-41 171.0 91 86.8
Prupe.5G022400 Prunus persica HOM05D000452 ORTHO05D000647 4.5e-41 171.0 102 81.4
HPP92_015137 Vanilla planifolia HOM05D000452 ORTHO05D000647 4.5e-41 171.0 92 84.8
HPP92_025610 Vanilla planifolia HOM05D000452 ORTHO05D000647 4.5e-41 171.0 92 81.5
FAN13G2189 Fragaria x ananassa HOM05D000452 ORTHO05D000647 1.3e-40 169.5 91 85.7
Lsat_1_v5_gn_6_73140 Lactuca sativa HOM05D000452 ORTHO05D000647 1.7e-40 169.1 90 84.4
ECA233G0787 Erigeron canadensis HOM05D000096 ORTHO05D000647 2.3e-40 168.7 88 88.6
Hma1.2p1_0316F.1_g123080 Hydrangea macrophylla HOM05D000452 ORTHO05D000647 5.0e-40 167.5 93 84.9
CDE02G1663 Ceratophyllum demersum HOM05D000452 ORTHO05D000647 6.5e-40 167.2 92 82.6
Ciclev10000699m.g Citrus clementina HOM05D000452 ORTHO05D000647 6.5e-40 167.2 83 94.0
SGA_v2.0_scaffold144G35869 Striga asiatica HOM05D000452 ORTHO05D000647 8.6e-40 166.8 82 92.7
Eucgr.E01243 Eucalyptus grandis HOM05D000452 ORTHO05D000647 2.5e-39 165.2 92 83.7
SalBow8G0621 Salvia bowleyana HOM05D000452 ORTHO05D000647 3.2e-39 164.9 91 80.2
ClCG10G001110 Citrullus lanatus HOM05D000452 ORTHO05D000647 5.5e-39 164.1 124 67.7
Nn3g19230 Nelumbo nucifera HOM05D000452 ORTHO05D000647 1.2e-38 162.9 83 86.7
SEGI_31965 Sequoiadendron giganteum HOM05D000452 ORTHO05D000647 2.8e-38 161.8 92 79.3
Nitab4.5_0001424g0040 Nicotiana tabacum HOM05D000452 ORTHO05D000647 1.8e-37 159.1 92 80.4
Os02g0102800 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 3.0e-37 158.3 87 82.8
GSVIVG01022620001 Vitis vinifera HOM05D000452 ORTHO05D000647 3.0e-37 158.3 83 88.0
Peaxi162Scf00045g00460 Petunia axillaris HOM05D000452 ORTHO05D000647 6.8e-37 157.1 92 79.3
Sopen08g001450 Solanum pennellii HOM05D000452 ORTHO05D000647 1.5e-36 156.0 92 78.3
Zm00001eb110830 Zea mays HOM05D000452 ORTHO05D000647 1.5e-36 156.0 87 80.5
CDE01G0024 Ceratophyllum demersum HOM05D000452 ORTHO05D000647 2.0e-36 155.6 105 73.3
Solyc08g005410.3 Solanum lycopersicum HOM05D000452 ORTHO05D000647 2.6e-36 155.2 92 78.3
PGSC0003DMG400018467 Solanum tuberosum HOM05D000452 ORTHO05D000647 2.6e-36 155.2 92 78.3
CAN.G137.18 Capsicum annuum HOM05D000452 ORTHO05D000647 5.7e-36 154.1 92 77.2
Os10g0455900 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 5.7e-36 154.1 93 76.3
GSVIVG01022623001 Vitis vinifera HOM05D000452 ORTHO05D000647 9.8e-36 153.3 91 76.9
GSVIVG01011336001 Vitis vinifera HOM05D000452 ORTHO05D000647 6.3e-35 150.6 91 76.9
AagrBONN_evm.TU.Sc2ySwM_344.2109 Anthoceros agrestis HOM05D000452 ORTHO05D000647 1.4e-34 149.4 92 70.7
Potri.008G213000 Populus trichocarpa HOM05D000452 ORTHO05D000647 4.1e-34 147.9 88 73.9
Pp3c15_25740 Physcomitrium patens HOM05D000452 ORTHO05D000647 5.4e-34 147.5 92 75.0
Zm00001eb229340 Zea mays HOM05D000452 ORTHO05D000647 5.4e-34 147.5 87 74.7
Os06g0116500 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D000647 9.2e-34 146.7 87 74.7
Mapoly0013s0066 Marchantia polymorpha HOM05D000452 ORTHO05D000647 1.6e-33 146.0 96 70.8
Zm00001eb269160 Zea mays HOM05D000452 ORTHO05D000647 1.0e-32 143.3 84 71.4
Eucgr.D02608 Eucalyptus grandis HOM05D000452 ORTHO05D000647 5.6e-31 137.5 71 87.3
Pp3c9_22930 Physcomitrium patens HOM05D000452 ORTHO05D000647 1.0e-29 133.3 86 70.9
Nitab4.5_0007729g0010 Nicotiana tabacum HOM05D000452 ORTHO05D000647 2.6e-28 128.6 71 83.1
Duzib084G0770 Durio zibethinus HOM05D000452 ORTHO05D000647 3.0e-24 115.2 92 64.1
SHI20251 Sapria himalayana HOM05D000452 ORTHO05D000647 6.6e-24 114.0 163 41.7
Actinidia27267 Actinidia chinensis HOM05D000452 ORTHO05D000647 5.2e-21 104.4 61 77.0
Actinidia32766 Actinidia chinensis HOM05D000452 ORTHO05D000647 1.5e-20 102.8 64 78.1
CBR_g44571 Chara braunii HOM05D000452 ORTHO05D000647 8.3e-19 97.1 81 46.9
AUR62027333 Chenopodium quinoa HOM05D000452 ORTHO05D000647 5.4e-18 94.4 43 95.3
BraA03t14258Z Brassica rapa HOM05D000452 ORTHO05D000647 1.6e-17 92.8 46 87.0
HanXRQChr16g0531511 Helianthus annuus HOM05D000452 ORTHO05D000647 4.6e-17 91.3 52 82.7
Gorai.010G148000 Gossypium raimondii HOM05D002927 ORTHO05D015040 2.3e-16 89.0 43 93.0
Actinidia01271 Actinidia chinensis HOM05D000452 ORTHO05D000647 1.1e-15 86.7 47 85.1
vmacro14223 Vaccinium macrocarpon HOM05D000452 ORTHO05D000647 2.5e-15 85.5 57 71.9
Hund14337 Selenicereus undatus HOM05D000452 ORTHO05D000647 9.5e-15 83.6 44 86.4
Zm00001eb209970 Zea mays HOM05D000452 ORTHO05D000647 2.1e-09 65.9 87 43.7
Mapoly0001s0416 Marchantia polymorpha HOM05D000452 ORTHO05D002419 1.7e-08 62.8 83 36.1
Actinidia04636 Actinidia chinensis HOM05D000452 ORTHO05D000647 1.5e-07 59.7 27 92.6
Zm00001eb041250 Zea mays HOM05D000452 ORTHO05D000647 1.6e-06 56.2 78 33.3
VMungo1309G0535 Vigna mungo HOM05D000452 ORTHO05D000647 2.8e-06 55.5 81 30.9
Cc02_g11280 Coffea canephora HOM05D000452 ORTHO05D002419 3.6e-06 55.1 75 32.0
Phvul.009G208300 Phaseolus vulgaris HOM05D000452 ORTHO05D000647 3.6e-06 55.1 84 29.8
Glyma.10G210400 Glycine max HOM05D000452 ORTHO05D002419 6.2e-06 54.3 83 28.9


User provided reference genes

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