Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 1.3e-117 426.4 214 100.0
MBI07_g03814_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 6.1e-43 178.3 93 96.8
MBI09_g01022_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 6.1e-43 178.3 93 96.8
MBI16_g26159_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D004199 1.7e-40 170.2 88 97.7
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 1.3e-29 134.0 156 47.4
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 2.3e-29 133.3 149 46.3
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 1.2e-25 120.9 157 42.0
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 5.4e-23 112.1 143 44.1
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 1.2e-22 110.9 160 36.2
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 9.5e-20 101.3 146 41.8
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.6e-19 100.5 142 40.8
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.1e-19 100.1 153 39.2
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 6.2e-19 98.6 152 40.1
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 8.1e-19 98.2 143 42.0
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 8.1e-19 98.2 143 42.0
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 8.1e-19 98.2 153 38.6
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 1.4e-18 97.4 146 39.7
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 2.3e-18 96.7 143 42.7
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 5.2e-18 95.5 145 37.9
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 6.8e-18 95.1 143 41.3
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 6.8e-18 95.1 145 37.2
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.5e-17 94.0 145 37.9
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.6e-17 93.2 142 38.0
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 3.4e-17 92.8 167 36.5
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.4e-17 92.8 155 36.1
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 3.4e-17 92.8 145 36.6
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 7.6e-17 91.7 172 35.5
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 9.9e-17 91.3 145 38.6
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 9.9e-17 91.3 142 34.5
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 1.3e-16 90.9 142 38.0
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.7e-16 90.5 144 36.8
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 1.7e-16 90.5 153 35.3
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 2.2e-16 90.1 146 34.2
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 2.2e-16 90.1 145 36.6
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 2.9e-16 89.7 141 35.5
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 2.9e-16 89.7 145 36.6
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 2.9e-16 89.7 146 38.4
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 2.9e-16 89.7 141 36.2
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 3.8e-16 89.4 142 38.0
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 4.9e-16 89.0 141 35.5
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 4.9e-16 89.0 143 36.4
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 6.4e-16 88.6 143 36.4
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 8.4e-16 88.2 142 35.9
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 8.4e-16 88.2 142 38.7
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 1.1e-15 87.8 143 36.4
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 1.1e-15 87.8 145 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 1.4e-15 87.4 150 34.0
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.4e-15 87.4 145 34.5
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 1.4e-15 87.4 142 34.5
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 1.9e-15 87.0 143 37.8
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 2.4e-15 86.7 150 36.0
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 2.4e-15 86.7 136 35.3
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 2.4e-15 86.7 145 31.7
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 2.4e-15 86.7 146 31.5
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.4e-15 86.7 143 34.3
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 35.5
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 35.5
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 35.5
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 35.5
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 35.5
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 3.2e-15 86.3 142 37.3
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 3.2e-15 86.3 141 34.8
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 3.2e-15 86.3 145 34.5
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 3.2e-15 86.3 142 33.1
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 3.2e-15 86.3 189 34.4
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 3.2e-15 86.3 142 36.6
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 4.1e-15 85.9 142 36.6
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 4.1e-15 85.9 145 35.9
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 4.1e-15 85.9 145 35.2
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 4.1e-15 85.9 142 35.2
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 5.4e-15 85.5 145 34.5
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 5.4e-15 85.5 145 34.5
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 5.4e-15 85.5 145 34.5
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 5.4e-15 85.5 141 36.2
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 7.1e-15 85.1 143 37.8
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 7.1e-15 85.1 143 35.0
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 7.1e-15 85.1 143 34.3
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 9.2e-15 84.7 142 34.5
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 9.2e-15 84.7 148 32.4
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.2e-14 84.3 142 36.6
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 1.2e-14 84.3 146 33.6
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 1.6e-14 84.0 142 31.7
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 2.1e-14 83.6 142 35.9
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 2.1e-14 83.6 142 35.9
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 2.1e-14 83.6 142 35.9
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 2.7e-14 83.2 138 36.2
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 2.7e-14 83.2 145 35.2
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.5e-14 82.8 142 36.6
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.5e-14 82.8 142 36.6
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 3.5e-14 82.8 143 33.6
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 4.6e-14 82.4 142 33.1
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 4.6e-14 82.4 142 35.2
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 4.6e-14 82.4 143 35.7
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 4.6e-14 82.4 148 33.8
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 4.6e-14 82.4 141 34.8
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 6.0e-14 82.0 143 34.3
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 7.8e-14 81.6 145 33.1
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 7.8e-14 81.6 136 33.1
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 7.8e-14 81.6 145 34.5
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.0e-13 81.3 179 31.8
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 1.0e-13 81.3 136 36.8
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 1.3e-13 80.9 142 34.5
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 1.7e-13 80.5 141 31.2
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.7e-13 80.5 145 33.1
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.7e-13 80.5 142 34.5
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.7e-13 80.5 141 34.8
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 2.3e-13 80.1 145 34.5
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 3.9e-13 79.3 145 32.4
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 5.1e-13 79.0 143 32.2
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 5.1e-13 79.0 145 33.8
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 8.6e-13 78.2 145 34.5
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 1.5e-12 77.4 149 32.9
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 4.3e-12 75.9 144 32.6
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 5.6e-12 75.5 142 33.1
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 7.3e-12 75.1 144 33.3
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 9.6e-12 74.7 142 32.4
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.6e-11 73.9 143 30.8
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 1.6e-11 73.9 126 33.3
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.1e-11 73.6 142 33.8
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 2.8e-11 73.2 143 30.8
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 4.7e-11 72.4 178 27.5
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 6.2e-11 72.0 119 38.7
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 8.1e-11 71.6 139 31.7
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 1.1e-10 71.2 139 31.7
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 1.1e-10 71.2 144 29.2
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 1.8e-10 70.5 143 33.6
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 1.8e-10 70.5 140 30.7
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 3.1e-10 69.7 149 27.5
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 6.9e-10 68.6 154 31.2
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.5e-09 67.4 145 26.9
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.5e-09 67.4 145 26.9
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.5e-09 67.4 145 26.9
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 2.6e-09 66.6 142 31.7
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 4.4e-09 65.9 122 33.6
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 7.6e-09 65.1 172 27.3
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.3e-08 64.3 150 28.7
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 1.3e-08 64.3 130 31.5
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 3.8e-08 62.8 54 53.7
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 1.6e-06 57.4 55 49.1
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 7.8e-06 55.1 54 40.7


User provided reference genes

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