Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 2535.0 1291 100.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1819.3 1262 74.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1788.1 1278 70.9
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1779.2 1279 72.1
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1778.5 1281 70.5
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1772.3 1259 71.6
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1761.9 1259 70.6
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1752.3 1260 70.1
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1751.9 1273 69.8
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1748.8 1260 70.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1747.6 1277 70.2
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1742.6 1306 69.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1742.6 1281 69.2
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1738.4 1261 70.5
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1735.3 1277 69.5
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1734.9 1275 69.7
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1733.8 1257 70.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1733.0 1276 68.8
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1731.5 1276 68.7
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1728.8 1276 68.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1717.6 1275 69.5
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1717.2 1260 70.0
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1714.5 1263 69.0
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1711.8 1263 69.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1276 68.0
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1704.5 1265 68.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1703.3 1271 69.3
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1700.6 1270 69.0
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1696.4 1273 69.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1694.5 1274 68.0
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1693.3 1271 68.2
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1688.7 1273 67.2
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1686.4 1297 66.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1683.7 1268 67.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1679.8 1272 67.0
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1678.3 1274 67.4
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1677.5 1260 69.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1673.7 1269 67.4
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1671.0 1323 65.9
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1669.8 1263 67.3
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1669.4 1265 67.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1662.9 1267 67.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1662.1 1266 68.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1661.4 1260 69.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1658.7 1278 66.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1655.2 1265 67.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1654.4 1263 66.5
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1653.6 1275 66.0
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1263 66.0
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1263 67.1
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1647.5 1263 66.1
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1645.2 1263 66.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1643.2 1260 66.6
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1334 64.2
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1260 66.0
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1316 64.2
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1267 65.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1629.0 1308 65.4
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1627.8 1264 65.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1626.7 1283 66.3
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1625.9 1265 66.5
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1614.0 1189 69.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1610.9 1268 65.3
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1607.8 1259 65.0
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1607.4 1275 64.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1606.3 1275 64.7
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1604.7 1260 65.2
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1261 64.9
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1598.6 1318 63.4
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1266 64.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1277 63.7
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1585.5 1259 64.5
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1193 67.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1560.4 1240 65.2
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1558.5 1264 64.1
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1550.8 1257 64.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1540.4 1273 63.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1537.7 1272 62.9
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1536.2 1261 63.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1536.2 1275 62.7
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1261 63.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1535.0 1195 66.2
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1533.1 1303 63.1
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1530.8 1273 63.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1516.5 1258 62.2
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1504.6 1201 65.2
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1500.3 1261 62.3
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1473.0 1014 73.8
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1471.4 1259 61.5
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1212 62.5
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1458.4 1174 65.1
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1454.9 1270 61.0
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1424.5 1028 70.1
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1406.7 1264 58.5
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1404.0 1287 57.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1276.9 1046 64.6
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1214.1 888 68.6
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1197.6 1252 53.1
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1164.8 971 62.4
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1150.2 1266 49.8
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1149.4 1274 50.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 4.1e-307 1058.5 953 59.6
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 5.0e-305 1051.6 1229 47.3
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 9.3e-304 1047.3 888 62.5
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 8.7e-302 1040.8 796 65.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 2.3e-294 1016.1 675 77.6
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 2.6e-285 986.1 817 62.9
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 1.5e-264 917.1 1245 43.9
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.5e-213 746.1 1315 37.0
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.9e-212 743.4 541 70.4
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.2e-197 694.9 606 59.6
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.4e-184 649.0 1414 33.7
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.0e-181 641.0 481 69.2
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 3.3e-176 623.6 619 52.8
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.1e-174 617.1 1277 33.0
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 3.3e-168 597.0 500 63.0
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 7.2e-155 552.7 666 48.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 6.2e-130 469.9 336 72.0
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.0e-128 464.9 1156 31.5
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 1.7e-124 451.8 700 43.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.6e-117 428.7 277 76.9
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.7e-95 355.5 342 55.8
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 4.9e-95 354.0 233 76.8
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.1e-89 334.7 266 62.4
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.1e-89 334.7 266 62.4
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 6.4e-87 327.0 238 71.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.8e-79 301.2 201 75.1
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.8e-74 284.3 239 61.5
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 3.3e-59 235.0 179 67.6
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 1.7e-55 222.6 175 66.3
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.2e-54 217.2 161 70.2
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 8.3e-42 177.2 157 56.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.1e-41 176.8 1269 22.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.7e-40 172.2 104 76.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 6.3e-34 151.0 124 62.1
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.7e-32 145.6 98 70.4
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.6e-29 135.2 225 39.1
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.5e-27 129.8 125 57.6
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 2.9e-23 115.5 115 48.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 2.5e-22 112.5 115 47.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 3.1e-20 105.5 161 39.1
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 4.4e-19 101.7 132 39.4
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 9.8e-19 100.5 94 53.2
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.4e-17 96.7 62 74.2
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 4.1e-17 95.1 158 38.0
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.3e-15 90.1 123 41.5
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.4e-12 80.1 103 40.8
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-11 77.0 157 37.6
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 2.0e-11 76.3 91 46.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.1e-09 70.5 126 38.9
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 2.4e-09 69.3 46 69.6
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 5.4e-09 68.2 49 67.3
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 5.4e-09 68.2 130 34.6
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.6e-08 65.1 270 24.4
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 7.3e-06 57.8 66 48.5
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 7.3e-06 57.8 47 59.6


User provided reference genes

Program Settings