Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.8e-167 592.4 287 100.0
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 8.4e-80 301.2 272 62.5
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.9e-79 300.1 280 60.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 9.3e-79 297.7 280 59.3
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.7e-78 296.2 280 59.6
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.7e-78 296.2 280 59.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.8e-77 293.5 273 63.0
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.3e-77 293.1 272 60.7
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.3e-77 293.1 272 61.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.3e-77 293.1 280 59.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.9e-77 292.4 280 59.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.9e-77 292.4 280 58.2
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 3.9e-77 292.4 280 58.2
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 5.1e-77 292.0 280 59.3
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.7e-77 291.6 272 60.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 6.7e-77 291.6 272 60.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.7e-77 291.6 273 64.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 6.7e-77 291.6 280 58.9
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 8.7e-77 291.2 272 61.8
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.5e-76 290.4 272 60.3
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.5e-76 290.4 273 60.1
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.5e-76 290.4 272 60.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.9e-76 290.0 280 58.2
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 2.5e-76 289.7 276 59.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.5e-76 289.7 272 59.9
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.3e-76 288.9 270 60.4
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.3e-76 288.9 280 57.5
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.3e-76 288.9 280 57.5
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.3e-76 288.9 280 58.6
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 5.6e-76 288.5 281 59.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 7.4e-76 288.1 272 59.2
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 7.4e-76 288.1 280 58.2
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 7.4e-76 288.1 277 58.8
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 9.6e-76 287.7 280 57.9
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.3e-75 287.3 272 59.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-75 287.0 280 58.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.1e-75 286.6 270 61.5
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.8e-75 286.2 279 57.7
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.8e-75 286.2 271 59.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.8e-75 286.2 272 59.9
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.7e-75 285.8 280 57.5
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.7e-75 285.8 280 58.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.8e-75 285.4 280 57.1
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.8e-75 285.4 280 56.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 4.8e-75 285.4 270 60.0
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.1e-74 284.3 272 59.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.1e-74 284.3 280 57.1
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.1e-74 284.3 269 60.2
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-74 284.3 272 60.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.4e-74 283.9 272 59.6
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.4e-74 283.9 272 59.6
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.4e-74 283.9 272 59.6
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.4e-74 283.9 279 57.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.8e-74 283.5 279 57.7
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-74 283.5 280 56.8
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.8e-74 283.5 280 56.8
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.4e-74 283.1 272 59.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.4e-74 283.1 272 58.5
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 5.3e-74 282.0 271 59.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 5.3e-74 282.0 271 59.0
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 5.3e-74 282.0 272 59.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 6.9e-74 281.6 270 60.4
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 9.0e-74 281.2 272 58.1
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.2e-73 280.8 276 59.1
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.5e-73 280.4 272 59.6
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.5e-73 280.4 270 60.4
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.4e-73 279.3 271 58.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 3.4e-73 279.3 270 60.4
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 3.4e-73 279.3 279 56.6
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 4.5e-73 278.9 273 59.3
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 4.5e-73 278.9 280 55.7
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.8e-73 278.5 280 56.4
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.8e-73 278.5 270 59.3
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 7.6e-73 278.1 279 57.3
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 7.6e-73 278.1 279 57.3
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 7.6e-73 278.1 280 56.1
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 7.6e-73 278.1 279 57.7
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 7.6e-73 278.1 280 56.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 7.6e-73 278.1 273 59.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.0e-72 277.7 269 58.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 1.7e-72 276.9 269 58.7
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.7e-72 276.9 272 58.1
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.2e-72 276.6 280 57.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.2e-72 276.6 298 55.0
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.2e-72 276.6 280 55.7
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-72 276.6 272 58.1
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.2e-72 276.6 270 59.3
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 4.9e-72 275.4 279 57.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 4.9e-72 275.4 272 57.0
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.5e-72 275.0 269 58.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 6.5e-72 275.0 279 55.9
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.4e-72 274.6 271 58.3
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.4e-72 274.6 272 56.6
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 8.4e-72 274.6 270 58.1
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.1e-71 274.2 280 55.0
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.2e-71 272.3 276 55.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 4.2e-71 272.3 272 58.1
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.1e-71 271.6 276 54.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.1e-71 271.6 276 54.7
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 7.1e-71 271.6 276 54.7
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 7.1e-71 271.6 269 57.6
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 9.3e-71 271.2 272 58.1
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 9.3e-71 271.2 281 55.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.2e-70 270.8 272 57.4
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.7e-70 269.6 272 58.1
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.7e-70 269.6 270 57.8
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.5e-70 269.2 270 57.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.5e-70 269.2 270 57.0
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 4.6e-70 268.9 272 57.4
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 6.0e-70 268.5 286 54.2
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 6.0e-70 268.5 279 55.6
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 7.9e-70 268.1 272 57.7
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.8e-69 266.9 270 56.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.8e-69 266.9 269 56.1
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.3e-69 266.5 272 56.6
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.3e-69 266.5 269 56.1
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.9e-69 265.8 272 57.0
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 3.9e-69 265.8 269 57.2
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 6.7e-69 265.0 271 56.5
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.7e-69 265.0 270 56.7
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 6.7e-69 265.0 272 57.4
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.1e-68 264.2 279 55.6
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.5e-68 263.8 272 57.4
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 1.9e-68 263.5 269 55.8
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 3.3e-68 262.7 280 55.0
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 5.7e-68 261.9 271 56.5
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.3e-67 260.8 271 57.6
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.6e-67 260.4 272 57.0
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.2e-67 260.0 269 55.0
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 4.8e-67 258.8 269 54.3
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.1e-66 257.7 269 54.3
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.8e-66 256.9 271 56.5
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 3.1e-66 256.1 280 52.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.1e-66 256.1 279 53.0
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.2e-65 254.2 271 52.8
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.0e-65 253.4 272 54.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 7.7e-65 251.5 271 54.6
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.4e-63 247.3 271 53.5
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.5e-63 246.5 267 54.3
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 3.2e-63 246.1 280 51.8
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.2e-63 246.1 271 53.1
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.1e-60 237.7 274 52.9
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.7e-59 233.8 278 51.4
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.8e-59 233.0 289 49.5
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.8e-58 230.3 271 49.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 9.1e-58 228.0 267 51.3
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 5.9e-57 225.3 249 53.8
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-56 223.8 266 51.9
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 2.1e-54 216.9 235 53.6
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.4e-47 194.1 211 53.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.1e-46 190.3 159 62.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.6e-46 189.5 275 44.0
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.3e-45 186.8 221 52.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.7e-44 182.2 264 45.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.3e-43 181.0 277 42.6
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 8.2e-43 178.3 101 82.2
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-36 157.9 94 80.9
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.3e-32 144.4 274 38.0
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.5e-31 141.0 289 36.3
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.8e-26 124.0 69 82.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 5.9e-25 119.0 243 36.2
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.6e-22 109.8 141 48.2
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.4e-21 107.8 140 45.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.3e-16 91.3 50 90.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.5e-15 87.8 67 67.2
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.3e-08 63.9 81 43.2


User provided reference genes

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