Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 2.7e-48 195.3 120 100.0
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 7.7e-19 97.4 117 52.1
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 9.4e-17 90.5 124 48.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-16 90.1 115 50.4
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.2e-16 90.1 114 53.5
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 5.2e-15 84.7 113 48.7
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 6.8e-15 84.3 84 59.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.5e-14 83.2 115 47.0
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 2.0e-14 82.8 98 52.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.0e-14 82.8 101 48.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 2.6e-14 82.4 83 61.4
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 2.6e-14 82.4 84 57.1
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.6e-14 82.4 84 57.1
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 2.6e-14 82.4 83 59.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.4e-14 82.0 80 58.8
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 3.4e-14 82.0 98 51.0
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.4e-14 82.0 83 63.9
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 4.4e-14 81.6 117 58.1
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 5.7e-14 81.3 82 59.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 5.7e-14 81.3 83 66.3
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 7.5e-14 80.9 84 56.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 7.5e-14 80.9 84 57.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 7.5e-14 80.9 84 57.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 7.5e-14 80.9 84 60.7
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 9.8e-14 80.5 82 57.3
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 9.8e-14 80.5 82 57.3
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 9.8e-14 80.5 118 55.9
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 9.8e-14 80.5 83 56.6
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.8e-14 80.5 82 58.5
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.8e-14 80.5 83 66.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.3e-13 80.1 113 47.8
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.3e-13 80.1 86 55.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.7e-13 79.7 84 57.1
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.7e-13 79.7 113 53.1
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.7e-13 79.7 101 49.5
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.2e-13 79.3 82 57.3
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.2e-13 79.3 83 56.6
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.8e-13 79.0 115 50.4
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.8e-13 79.0 83 67.5
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 3.7e-13 78.6 83 55.4
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 3.7e-13 78.6 113 52.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.8e-13 78.2 83 68.7
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 4.8e-13 78.2 83 54.2
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 6.3e-13 77.8 84 61.9
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 6.3e-13 77.8 80 55.0
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 6.3e-13 77.8 113 56.6
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 6.3e-13 77.8 116 47.4
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.3e-13 77.8 118 57.6
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 8.3e-13 77.4 115 47.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 8.3e-13 77.4 80 57.5
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 8.3e-13 77.4 83 66.3
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.1e-12 77.0 76 69.7
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.1e-12 77.0 87 55.2
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-12 77.0 83 68.7
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.1e-12 77.0 83 63.9
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.4e-12 76.6 81 55.6
MBI04_g21753_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.4e-12 76.6 61 73.8
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.4e-12 76.6 115 52.2
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 1.4e-12 76.6 82 72.0
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 1.8e-12 76.3 84 53.6
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.8e-12 76.3 84 54.8
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.8e-12 76.3 80 58.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.8e-12 76.3 82 65.9
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.8e-12 76.3 84 57.1
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.8e-12 76.3 84 57.1
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.8e-12 76.3 84 63.1
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-12 76.3 115 47.0
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.4e-12 75.9 86 50.0
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.4e-12 75.9 118 45.8
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.1e-12 75.5 121 45.5
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 4.1e-12 75.1 104 45.2
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.1e-12 75.1 118 55.1
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 5.4e-12 74.7 82 54.9
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 5.4e-12 74.7 78 55.1
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 5.4e-12 74.7 78 53.8
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 5.4e-12 74.7 83 54.2
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 9.1e-12 73.9 96 49.0
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.1e-12 73.9 82 67.1
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.1e-12 73.9 117 57.3
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 9.1e-12 73.9 81 54.3
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-11 73.6 79 53.2
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.2e-11 73.6 99 55.6
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.2e-11 73.6 82 67.1
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.2e-11 73.6 82 54.9
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.2e-11 73.6 98 45.9
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 2.0e-11 72.8 84 54.8
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 2.0e-11 72.8 85 52.9
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.7e-11 72.4 115 50.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.7e-11 72.4 84 50.0
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.5e-11 72.0 82 62.2
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.5e-11 72.0 82 67.1
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.5e-11 72.0 82 67.1
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.5e-11 72.0 82 65.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 5.9e-11 71.2 115 44.3
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 5.9e-11 71.2 86 65.1
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 5.9e-11 71.2 87 48.3
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 7.7e-11 70.9 81 49.4
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.7e-11 70.9 83 50.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.3e-10 70.1 75 66.7
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 1.3e-10 70.1 81 50.6
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.3e-10 70.1 83 50.6
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.3e-10 70.1 79 49.4
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.7e-10 69.7 84 47.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.3e-10 69.3 85 49.4
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.3e-10 69.3 101 47.5
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 2.9e-10 68.9 86 52.3
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 2.9e-10 68.9 82 51.2
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.9e-10 68.9 81 63.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 3.8e-10 68.6 85 49.4
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 5.0e-10 68.2 83 48.2
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 5.0e-10 68.2 81 51.9
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.0e-10 68.2 101 46.5
CDE11G0526 Ceratophyllum demersum HOM05D003381 ORTHO05D130251 1.9e-09 66.2 108 49.1
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 2.5e-09 65.9 89 49.4
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.3e-09 65.5 111 53.2
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 4.2e-09 65.1 75 48.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 5.5e-09 64.7 99 43.4
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.5e-09 63.9 83 44.6
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.2e-08 63.5 82 61.0
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.2e-08 63.5 96 52.1
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.6e-08 63.2 73 49.3
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-08 63.2 84 57.1
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-08 63.2 84 57.1
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 2.1e-08 62.8 79 64.6
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.1e-08 62.8 88 42.0
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.8e-08 62.4 76 48.7
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.6e-08 62.0 80 62.5
MBI12_g23072_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 4.7e-08 61.6 93 57.0
MBI12_g33141_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 4.7e-08 61.6 93 57.0
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 6.1e-08 61.2 115 44.3
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 6.1e-08 61.2 118 52.5
MBI12_g23073_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 8.0e-08 60.8 118 49.2
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 8.0e-08 60.8 47 70.2
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.8e-07 59.7 84 53.6
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.8e-07 59.7 81 44.4
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.8e-07 59.7 119 46.2
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 6.8e-07 57.8 49 61.2
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 6.8e-07 57.8 114 50.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 8.9e-07 57.4 54 59.3
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 8.9e-07 57.4 84 48.8
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 1.2e-06 57.0 115 50.4
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.2e-06 57.0 85 42.4
SEGI_32433 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.4e-06 55.1 81 40.7
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 5.7e-06 54.7 79 44.3
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 5.7e-06 54.7 81 42.0
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 5.7e-06 54.7 82 45.1


User provided reference genes

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