Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.0e-39 165.2 80 100.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 2.0e-15 85.5 39 94.9
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 5.9e-15 84.0 38 94.7
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 5.9e-15 84.0 39 92.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 7.7e-15 83.6 39 92.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 7.7e-15 83.6 39 92.3
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.7e-15 83.6 39 92.3
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.0e-14 83.2 38 94.7
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.3e-14 82.8 37 97.3
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.7e-14 82.4 39 89.7
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.7e-14 82.4 39 89.7
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.7e-14 82.4 39 89.7
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.7e-14 82.4 62 64.5
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.7e-14 82.4 39 89.7
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.2e-14 82.0 39 89.7
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.2e-14 82.0 38 92.1
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.9e-14 81.6 38 92.1
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.9e-14 81.6 38 92.1
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.9e-14 81.6 38 92.1
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.9e-14 81.6 38 92.1
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 3.8e-14 81.3 39 87.2
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 3.8e-14 81.3 39 87.2
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 5.0e-14 80.9 39 87.2
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 5.0e-14 80.9 39 87.2
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.0e-14 80.9 38 89.5
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 5.0e-14 80.9 38 89.5
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 6.5e-14 80.5 38 89.5
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 6.5e-14 80.5 39 87.2
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 6.5e-14 80.5 39 92.3
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-14 80.5 38 89.5
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-14 80.5 38 89.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-14 80.5 38 89.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 6.5e-14 80.5 38 89.5
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 8.5e-14 80.1 38 89.5
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.1e-13 79.7 39 84.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.1e-13 79.7 38 89.5
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.5e-13 79.3 39 89.7
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.5e-13 79.3 39 89.7
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.5e-13 79.3 39 89.7
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.9e-13 79.0 38 86.8
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 1.9e-13 79.0 38 86.8
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 2.5e-13 78.6 39 82.1
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 2.5e-13 78.6 39 82.1
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.5e-13 78.6 38 84.2
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 86.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 86.8
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 86.8
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 86.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 86.8
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 3.2e-13 78.2 53 67.9
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.2e-13 78.2 39 87.2
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 3.2e-13 78.2 39 84.6
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 3.2e-13 78.2 39 87.2
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 84.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.2e-13 78.2 38 89.5
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 4.2e-13 77.8 39 89.7
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.2e-13 77.8 38 86.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 4.2e-13 77.8 38 86.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 5.5e-13 77.4 38 89.5
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 5.5e-13 77.4 38 89.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.5e-13 77.4 39 87.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.2e-13 77.0 39 84.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.2e-13 77.0 39 84.6
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 7.2e-13 77.0 38 84.2
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 9.4e-13 76.6 38 86.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 9.4e-13 76.6 39 82.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 9.4e-13 76.6 39 82.1
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 9.4e-13 76.6 39 82.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-13 76.6 38 89.5
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-13 76.6 38 89.5
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.2e-12 76.3 38 84.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.6e-12 75.9 39 82.1
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 1.6e-12 75.9 39 84.6
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.1e-12 75.5 37 86.5
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.1e-12 75.5 39 87.2
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.1e-12 75.5 39 87.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 2.1e-12 75.5 38 81.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.1e-12 75.5 63 61.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.6e-12 74.7 37 83.8
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.6e-12 74.7 37 83.8
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 4.7e-12 74.3 39 82.1
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 6.1e-12 73.9 38 86.8
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 2.3e-11 72.0 35 88.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.3e-11 72.0 39 82.1
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.3e-11 72.0 34 91.2
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.0e-11 71.6 34 88.2
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.5e-10 69.3 51 66.7
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.6e-10 68.6 54 57.4
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.0e-08 60.5 44 61.4
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 9.1e-08 60.1 37 73.0
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 4.5e-07 57.8 42 59.5
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 2.9e-06 55.1 36 63.9


User provided reference genes

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