Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.1e-229 799.7 402 100.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.6e-159 565.8 415 69.2
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 8.8e-152 540.8 410 67.8
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.4e-144 516.9 411 65.2
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.4e-144 516.9 412 65.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.5e-143 513.5 410 64.9
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.0e-143 513.1 409 63.3
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.6e-143 512.7 411 65.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 2.4e-141 506.1 411 64.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 3.2e-141 505.8 407 64.4
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 3.2e-141 505.8 383 66.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 9.2e-141 504.2 411 65.2
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.3e-139 499.6 411 62.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 3.0e-139 499.2 408 63.5
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 3.0e-139 499.2 409 64.5
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 6.6e-139 498.0 418 61.2
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 2.5e-138 496.1 413 62.5
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.6e-138 495.0 412 61.2
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 1.4e-136 490.3 413 62.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-136 490.3 413 62.0
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.4e-136 490.3 410 62.9
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.0e-136 488.8 411 61.6
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 5.2e-136 488.4 416 61.5
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 6.8e-136 488.0 411 60.8
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.2e-135 487.3 411 61.8
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.6e-135 486.1 410 61.5
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.4e-135 485.7 411 59.6
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.4e-135 485.7 479 54.1
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 4.4e-135 485.3 410 60.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.5e-135 484.6 413 61.5
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.8e-135 484.2 383 61.9
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.8e-135 484.2 378 63.0
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 9.8e-135 484.2 411 61.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-134 483.4 413 61.5
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 4.9e-134 481.9 438 59.4
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 8.3e-134 481.1 381 62.2
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 8.3e-134 481.1 420 60.0
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-133 479.9 413 61.0
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 3.2e-133 479.2 410 61.0
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.2e-133 479.2 410 61.0
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 7.0e-133 478.0 392 61.2
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 7.0e-133 478.0 405 61.0
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 7.0e-133 478.0 408 60.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 9.2e-133 477.6 406 60.3
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.5e-132 475.7 410 60.7
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 3.5e-132 475.7 406 61.1
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 6.0e-132 474.9 415 60.7
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 7.8e-132 474.6 387 62.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.0e-131 474.2 409 61.6
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-131 473.8 410 60.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 3.9e-131 472.2 390 59.7
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 5.0e-131 471.9 415 59.3
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 8.6e-131 471.1 384 64.3
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.1e-130 470.7 393 62.3
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.5e-130 470.3 410 60.7
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.9e-130 469.9 410 60.7
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.5e-130 469.5 422 60.0
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.3e-130 468.8 406 60.1
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.2e-129 467.2 382 61.5
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 3.6e-129 465.7 412 59.0
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 4.7e-129 465.3 414 57.7
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 4.7e-129 465.3 414 58.7
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.4e-128 463.8 410 58.5
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.8e-128 463.4 410 59.3
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.8e-128 463.4 376 62.0
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 4.0e-128 462.2 414 58.2
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.2e-127 460.7 342 68.7
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.6e-127 459.5 407 58.5
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 9.8e-127 457.6 387 59.9
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.7e-126 456.8 411 59.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.4e-125 453.8 382 60.7
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 2.1e-124 449.9 389 61.4
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 3.0e-123 446.0 416 58.9
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.9e-122 443.4 407 57.0
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 2.8e-121 439.5 413 57.1
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.6e-119 433.0 390 56.7
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.4e-119 432.6 414 58.0
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 9.9e-119 431.0 400 55.8
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.7e-118 430.3 414 54.8
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.2e-118 429.9 395 55.2
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 3.8e-118 429.1 419 55.8
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 1.9e-117 426.8 351 63.2
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 1.6e-116 423.7 400 55.5
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 4.3e-114 415.6 348 61.8
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.2e-113 414.1 368 59.5
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 6.9e-112 408.3 362 59.1
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.2e-111 407.5 420 52.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.2e-111 407.5 435 49.9
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.5e-111 407.1 416 54.1
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.0e-111 406.8 417 53.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 2.6e-111 406.4 416 54.1
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 4.4e-111 405.6 417 53.7
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 9.9e-111 404.4 418 52.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.9e-110 402.9 392 54.8
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 6.4e-110 401.7 357 56.9
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 4.2e-109 399.1 420 52.6
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.1e-108 396.7 427 50.6
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 3.5e-108 396.0 344 59.6
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 4.6e-108 395.6 440 49.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.7e-107 393.7 349 58.2
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 2.8e-105 386.3 347 58.2
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.1e-104 384.4 416 51.9
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.4e-103 379.4 416 50.7
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 9.6e-98 361.3 357 54.6
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-93 347.1 299 61.2
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 4.3e-90 335.9 470 40.4
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 1.6e-84 317.4 448 39.5
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.7e-84 316.6 367 46.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 4.3e-82 309.3 321 51.1
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.3e-78 297.7 264 56.4
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 2.9e-70 270.0 350 45.4
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.4e-69 267.7 217 62.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 1.5e-63 247.7 325 44.3
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.7e-60 236.9 192 62.0
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.0e-59 233.4 269 47.2
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.0e-58 230.7 188 61.2
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 2.6e-58 230.3 188 61.7
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 4.8e-57 226.1 155 71.6
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.0e-46 191.8 409 32.8
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 6.5e-46 189.1 230 44.8
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.6e-44 184.5 154 61.0
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.3e-41 174.9 320 33.4
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 2.8e-41 173.7 133 66.2
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.5e-39 166.4 136 60.3
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 9.5e-37 158.7 309 33.7
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.4e-32 142.9 115 58.3
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.5e-29 134.0 94 69.1
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 6.1e-28 129.4 252 33.7
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.3e-25 119.0 143 46.2
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.4e-24 117.5 590 24.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 3.0e-22 110.5 164 40.2
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.8e-19 101.3 77 66.2
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 3.2e-16 90.5 148 39.2
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.9e-13 81.3 50 78.0
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 3.1e-11 73.9 88 47.7
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 2.6e-10 70.9 320 24.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 4.4e-10 70.1 102 41.2
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.4e-08 65.1 77 50.6
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.2e-07 62.0 151 32.5


User provided reference genes

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