Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 5.4e-184 647.9 423 100.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.6e-127 459.1 392 63.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.3e-126 456.4 392 63.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.2e-124 448.0 392 61.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.2e-119 434.1 254 81.1
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 3.3e-117 426.0 254 80.3
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 9.7e-117 424.5 254 80.3
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.8e-116 422.9 255 80.8
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.1e-115 419.5 391 58.1
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 5.3e-115 418.7 259 78.8
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 7.0e-115 418.3 258 78.7
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 9.1e-115 417.9 391 58.6
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.2e-114 417.5 254 79.1
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.0e-114 416.8 391 57.8
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 2.6e-114 416.4 254 78.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.5e-114 415.6 257 77.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 7.7e-114 414.8 254 80.3
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.0e-113 414.5 392 57.7
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-113 414.1 254 80.7
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.3e-113 414.1 254 78.7
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-113 413.3 391 57.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-113 413.3 391 57.0
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.2e-113 413.3 391 56.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 2.2e-113 413.3 254 78.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.8e-113 412.5 254 78.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 3.8e-113 412.5 254 78.3
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.8e-113 412.5 253 77.5
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-112 411.0 389 57.3
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 5.5e-112 408.7 254 77.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.6e-111 407.1 253 78.7
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.7e-111 406.4 256 77.7
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 8.0e-111 404.8 390 61.3
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.0e-110 404.4 254 77.6
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 5.2e-110 402.1 391 56.0
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 8.8e-110 401.4 254 75.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.2e-109 401.0 254 74.8
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 4.4e-109 399.1 260 77.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 4.4e-109 399.1 254 75.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 5.7e-109 398.7 254 73.6
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 7.5e-109 398.3 254 74.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 9.7e-109 397.9 391 54.5
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.2e-108 396.7 259 73.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.8e-108 395.6 254 73.2
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 8.2e-108 394.8 254 76.0
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 8.2e-108 394.8 254 74.4
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 8.2e-108 394.8 254 74.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.1e-107 394.4 254 74.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.1e-107 394.4 368 59.8
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.4e-107 394.0 254 74.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.8e-107 393.7 252 75.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.8e-107 393.7 254 74.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.4e-107 393.3 253 75.5
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 2.4e-107 393.3 254 75.6
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.1e-107 392.5 393 56.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.1e-107 392.5 228 81.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.3e-107 392.1 254 74.8
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-106 390.6 252 75.4
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.6e-106 390.6 254 74.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.5e-106 389.4 255 73.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.5e-106 389.4 252 73.8
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 5.9e-106 388.7 255 71.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.7e-106 388.3 254 72.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 2.9e-105 386.3 261 73.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 9.4e-104 381.3 257 70.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.4e-104 381.3 254 71.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.2e-103 380.9 254 73.6
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-103 380.9 278 68.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.6e-103 380.6 259 72.2
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.4e-102 377.5 255 72.9
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.8e-102 377.1 255 70.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.3e-102 376.7 387 55.3
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.0e-102 376.3 254 69.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.6e-101 373.2 254 70.5
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.4e-101 372.9 255 72.5
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.5e-101 371.7 256 71.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 7.5e-101 371.7 398 52.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 9.8e-101 371.3 259 70.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 9.8e-101 371.3 254 72.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 2.8e-100 369.8 259 69.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.5e-98 362.8 224 79.5
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.5e-98 362.5 230 74.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.9e-98 362.1 253 70.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.7e-97 360.5 266 65.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 6.6e-97 358.6 329 55.9
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.1e-96 357.8 256 67.6
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.1e-95 352.1 254 67.3
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 6.6e-89 332.0 256 62.9
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-88 330.1 214 74.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.3e-88 329.7 254 61.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 4.3e-88 329.3 207 75.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 5.6e-88 328.9 215 73.0
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.6e-87 326.2 275 61.5
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 8.0e-87 325.1 254 60.2
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.0e-86 324.7 254 64.6
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 4.0e-86 322.8 254 59.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 6.8e-86 322.0 253 59.3
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 6.8e-86 322.0 231 68.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.3e-84 317.8 257 59.5
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.9e-84 316.6 254 63.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.1e-83 314.7 254 57.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 9.2e-83 311.6 254 57.5
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.0e-82 310.5 346 50.3
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.7e-82 310.1 262 57.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-79 301.2 262 59.2
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.1e-78 296.6 174 80.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 6.8e-78 295.4 254 54.7
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.2e-76 290.4 254 53.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-74 284.6 254 52.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-74 284.6 254 52.8
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-74 284.6 254 52.8
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 7.8e-74 282.0 254 52.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.0e-73 281.6 254 53.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.3e-73 280.4 254 53.5
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.3e-73 280.4 254 53.1
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.0e-73 280.0 255 52.5
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 9.9e-69 265.0 171 73.1
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.1e-67 261.5 168 75.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.1e-67 259.6 264 50.0
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.1e-62 245.0 159 71.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.2e-59 233.0 160 69.4
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 7.1e-59 232.3 313 42.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.1e-59 232.3 228 50.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.5e-56 224.6 153 71.2
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.5e-56 223.8 150 72.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.0e-41 175.3 113 74.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.8e-38 164.5 119 65.5
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.1e-38 163.7 114 74.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.2e-36 157.5 246 40.2
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.9e-34 149.1 99 72.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.1e-30 138.7 118 59.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.0e-30 136.7 80 78.8
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.4e-22 111.7 57 84.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.5e-16 90.9 49 87.8
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.8e-15 87.4 50 82.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.7e-15 87.0 209 33.0
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.2e-13 82.0 54 74.1
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 3.4e-13 80.5 50 72.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-12 77.8 48 72.9
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 7.2e-11 72.8 55 70.9


User provided reference genes

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