Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.4e-41 172.6 87 100.0
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.6e-16 88.6 68 76.5
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.3e-15 86.3 65 72.3
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.4e-14 82.8 65 70.8
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.4e-14 82.0 65 69.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 3.2e-14 81.6 64 70.3
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.2e-14 81.3 65 67.7
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 5.4e-14 80.9 65 67.7
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 9.2e-14 80.1 65 69.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 1.2e-13 79.7 64 68.8
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.1e-13 79.0 65 64.6
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.7e-13 78.6 68 64.7
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 6.0e-13 77.4 65 66.2
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 7.8e-13 77.0 65 66.2
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.0e-12 76.6 78 60.3
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.0e-12 76.6 65 66.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 1.0e-12 76.6 65 66.2
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.7e-12 75.9 65 63.1
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 2.3e-12 75.5 68 58.8
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 2.3e-12 75.5 64 65.6
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 2.3e-12 75.5 91 54.9
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.3e-12 75.5 65 63.1
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 3.0e-12 75.1 64 64.1
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 3.0e-12 75.1 65 66.2
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 3.9e-12 74.7 68 60.3
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 3.9e-12 74.7 68 60.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 3.9e-12 74.7 65 66.2
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 3.9e-12 74.7 91 54.9
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 3.9e-12 74.7 65 64.6
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 3.9e-12 74.7 68 60.3
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 3.9e-12 74.7 68 60.3
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 5.1e-12 74.3 68 60.3
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.1e-12 74.3 68 60.3
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 8.7e-12 73.6 65 66.2
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 8.7e-12 73.6 91 52.7
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.1e-11 73.2 68 58.8
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.1e-11 73.2 68 60.3
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.1e-11 73.2 68 60.3
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.1e-11 73.2 68 60.3
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 1.1e-11 73.2 85 56.5
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 1.5e-11 72.8 65 63.1
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 1.9e-11 72.4 64 60.9
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.5e-11 72.0 64 60.9
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 2.5e-11 72.0 64 62.5
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 3.3e-11 71.6 65 63.1
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.3e-11 71.6 65 63.1
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 3.3e-11 71.6 64 62.5
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 3.3e-11 71.6 65 60.0
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 4.3e-11 71.2 64 62.5
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.3e-11 71.2 65 61.5
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 4.3e-11 71.2 65 61.5
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 5.6e-11 70.9 65 63.1
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 5.6e-11 70.9 78 57.7
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 5.6e-11 70.9 65 63.1
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 5.6e-11 70.9 65 63.1
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 7.3e-11 70.5 64 60.9
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 7.3e-11 70.5 64 62.5
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 9.6e-11 70.1 65 60.0
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 9.6e-11 70.1 80 47.5
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 9.6e-11 70.1 68 60.3
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.3e-10 69.7 64 60.9
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.3e-10 69.7 65 61.5
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.6e-10 69.3 65 61.5
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.6e-10 69.3 64 60.9
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.6e-10 69.3 64 60.9
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.1e-10 68.9 65 61.5
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.8e-10 68.6 65 64.6
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.8e-10 68.6 64 57.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.8e-10 68.6 64 57.8
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 3.6e-10 68.2 65 60.0
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 3.6e-10 68.2 65 60.0
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 3.6e-10 68.2 65 60.0
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 3.6e-10 68.2 65 60.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 3.6e-10 68.2 65 60.0
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 6.2e-10 67.4 61 57.4
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.1e-10 67.0 68 58.8
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 8.1e-10 67.0 64 60.9
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 1.1e-09 66.6 65 61.5
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.1e-09 66.6 68 58.8
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.4e-09 66.2 64 54.7
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.4e-09 66.2 69 55.1
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 2.4e-09 65.5 91 48.4
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.0e-09 64.7 63 55.6
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.0e-08 62.4 65 53.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 2.0e-08 62.4 65 53.8
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.0e-08 62.4 64 51.6
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 2.0e-08 62.4 65 53.8
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 3.4e-08 61.6 64 53.1
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 4.4e-08 61.2 65 50.8
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.7e-07 59.3 66 56.1
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 2.2e-07 58.9 64 51.6
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 3.8e-07 58.2 40 75.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 3.8e-07 58.2 65 50.8


User provided reference genes

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