Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g14783_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 5.8e-74 280.8 142 100.0
MBI11_g23940_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.1e-19 100.5 69 72.5
Nn1g09646 Nelumbo nucifera HOM05D005198 ORTHO05D006839 1.8e-19 99.8 59 79.7
Sed0009334 Sechium edule HOM05D005198 ORTHO05D006839 5.4e-19 98.2 59 78.0
Ah.13g073540 Amaranthus hybridus HOM05D005198 ORTHO05D006839 9.1e-19 97.4 59 76.3
CsaV3_4G002810 Cucumis sativus L. HOM05D005198 ORTHO05D006839 9.1e-19 97.4 59 76.3
MELO3C017760.2 Cucumis melo HOM05D005198 ORTHO05D006839 1.2e-18 97.1 59 76.3
ClCG07G015220 Citrullus lanatus HOM05D005198 ORTHO05D006839 1.6e-18 96.7 59 76.3
TAR365G0102 Trochodendron aralioides HOM05D005198 ORTHO05D006839 1.6e-18 96.7 59 78.0
RcHm_v2.0_Chr2g0123631 Rosa chinensis HOM05D005198 ORTHO05D006839 2.7e-18 95.9 59 78.0
Cpa.g.sc9.361 Carica papaya HOM05D005198 ORTHO05D006839 3.5e-18 95.5 59 76.3
Ciclev10019752m.g Citrus clementina HOM05D005198 ORTHO05D006839 4.5e-18 95.1 59 78.0
Sc25g0002780 Simmondsia chinensis HOM05D005198 ORTHO05D006839 5.9e-18 94.7 59 76.3
Manes.04G036150 Manihot esculenta HOM05D005198 ORTHO05D006839 7.7e-18 94.4 59 76.3
Prupe.1G207000 Prunus persica HOM05D005198 ORTHO05D006839 7.7e-18 94.4 59 76.3
PGR142G0872 Punica granatum HOM05D005198 ORTHO05D006839 7.7e-18 94.4 59 76.3
Aa31LG4G3470 Aethionema arabicum HOM05D005198 ORTHO05D006839 1.0e-17 94.0 59 76.3
Eucgr.H00311 Eucalyptus grandis HOM05D005198 ORTHO05D006839 1.0e-17 94.0 59 74.6
Zm00001eb246620 Zea mays HOM05D005198 ORTHO05D006839 1.0e-17 94.0 62 69.4
CDE04G2667 Ceratophyllum demersum HOM05D005198 ORTHO05D006839 1.7e-17 93.2 59 74.6
COL.COLO4_23329 Corchorus olitorius HOM05D005198 ORTHO05D006839 1.7e-17 93.2 87 57.5
MD15G1424000 Malus domestica HOM05D005198 ORTHO05D006839 1.7e-17 93.2 59 74.6
Oeu020813.1 Olea europaea HOM05D005198 ORTHO05D006839 1.7e-17 93.2 59 74.6
Actinidia28982 Actinidia chinensis HOM05D005198 ORTHO05D006839 2.3e-17 92.8 59 72.9
Aqoxy2G02750 Aquilegia oxysepala HOM05D005198 ORTHO05D006839 2.3e-17 92.8 59 78.0
FAN26G1320 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.3e-17 92.8 59 76.3
Potri.013G126300 Populus trichocarpa HOM05D005198 ORTHO05D006839 2.3e-17 92.8 59 74.6
Sabra13G0105600 Salix brachista HOM05D005198 ORTHO05D006839 2.3e-17 92.8 59 74.6
EL10Ac3g06083 Beta vulgaris HOM05D005198 ORTHO05D006839 2.9e-17 92.4 59 74.6
CANSAT11G2028 Cannabis sativa HOM05D005198 ORTHO05D006839 2.9e-17 92.4 59 74.6
Cc03_g14040 Coffea canephora HOM05D005198 ORTHO05D006839 2.9e-17 92.4 62 71.0
FAN19G2119 Fragaria x ananassa HOM05D005198 ORTHO05D006839 2.9e-17 92.4 75 66.7
Medtr4g087280 Medicago truncatula HOM05D005198 ORTHO05D006839 2.9e-17 92.4 59 71.2
SGA_v2.0_scaffold12G06184 Striga asiatica HOM05D005198 ORTHO05D006839 2.9e-17 92.4 65 67.7
Dinv33201 Davidia involucrata HOM05D005198 ORTHO05D006839 3.8e-17 92.0 59 74.6
Hma1.2p1_0150F.1_g066860 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.8e-17 92.0 59 74.6
Hma1.2p1_0150F.1_g066870 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 3.8e-17 92.0 59 74.6
SalBow3G0226 Salvia bowleyana HOM05D005198 ORTHO05D006839 3.8e-17 92.0 59 72.9
ATR0733G245 Amborella trichopoda HOM05D005198 ORTHO05D006839 5.0e-17 91.7 59 71.2
CAN.G1411.3 Capsicum annuum HOM05D005198 ORTHO05D006839 5.0e-17 91.7 69 63.8
AUR62002390 Chenopodium quinoa HOM05D005198 ORTHO05D006839 5.0e-17 91.7 59 72.9
AUR62023798 Chenopodium quinoa HOM05D005198 ORTHO05D006839 5.0e-17 91.7 59 72.9
FAN28G0627 Fragaria x ananassa HOM05D005198 ORTHO05D006839 5.0e-17 91.7 59 74.6
SEGI_32957 Sequoiadendron giganteum HOM05D005198 ORTHO05D006839 5.0e-17 91.7 94 46.8
Solyc08g014060.4 Solanum lycopersicum HOM05D005198 ORTHO05D006839 5.0e-17 91.7 69 63.8
Sopen08g004940 Solanum pennellii HOM05D005198 ORTHO05D006839 5.0e-17 91.7 69 63.8
DCAR_027527 Daucus carota HOM05D005198 ORTHO05D006839 6.5e-17 91.3 75 60.0
FAN23G1744 Fragaria x ananassa HOM05D005198 ORTHO05D006839 6.5e-17 91.3 75 66.7
Migut.G01222 Erythranthe guttata HOM05D005198 ORTHO05D006839 8.6e-17 90.9 59 72.9
Thhalv10018413m.g Eutrema salsugineum HOM05D005198 ORTHO05D006839 8.6e-17 90.9 59 72.9
Sp5g28150 Schrenkiella parvula HOM05D005198 ORTHO05D006839 8.6e-17 90.9 59 72.9
AT1G73180 Arabidopsis thaliana HOM05D005198 ORTHO05D006839 1.1e-16 90.5 59 72.9
CARHR066180 Cardamine hirsuta HOM05D005198 ORTHO05D006839 1.1e-16 90.5 59 72.9
FvH4_1g25500 Fragaria vesca HOM05D005198 ORTHO05D006839 1.1e-16 90.5 59 74.6
Nitab4.5_0009616g0020 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.1e-16 90.5 69 62.3
Peaxi162Scf00075g01544 Petunia axillaris HOM05D005198 ORTHO05D006839 1.1e-16 90.5 69 62.3
unitig_92.g28215 Utricularia gibba HOM05D005198 ORTHO05D006839 1.1e-16 90.5 59 72.9
Thecc.01G302200 Theobroma cacao HOM05D005198 ORTHO05D006839 1.5e-16 90.1 59 71.2
Rhsim04G0106800 Rhododendron simsii HOM05D005198 ORTHO05D006839 1.9e-16 89.7 59 71.2
TWI63G1273 Tripterygium wilfordii HOM05D005198 ORTHO05D006839 1.9e-16 89.7 59 71.2
vmacro09048 Vaccinium macrocarpon HOM05D005198 ORTHO05D006839 1.9e-16 89.7 59 71.2
BcaC08g45664 Brassica carinata HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
A07p29920 Brassica napus HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
C06p34190 Brassica napus HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
BolC6t38540H Brassica oleracea HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
BraA07t30630Z Brassica rapa HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
Carub.0002s1997 Capsella rubella HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
Duzib151G0783 Durio zibethinus HOM05D005198 ORTHO05D006839 2.5e-16 89.4 59 71.2
Dinv07059 Davidia involucrata HOM05D005198 ORTHO05D006839 3.3e-16 89.0 80 57.5
THA.LOC104813938 Tarenaya hassleriana HOM05D005198 ORTHO05D006839 3.3e-16 89.0 58 70.7
PSO675G4502 Papaver somniferum HOM05D005198 ORTHO05D006839 4.2e-16 88.6 69 60.9
PSO732G0749 Papaver somniferum HOM05D005198 ORTHO05D006839 4.2e-16 88.6 69 60.9
Ca_25383_v3 Cicer arietinum L. HOM05D005198 ORTHO05D006839 5.5e-16 88.2 59 69.5
AL2G32950 Arabidopsis lyrata HOM05D005198 ORTHO05D006839 7.2e-16 87.8 59 71.2
CiPaw.02G100600 Carya illinoinensis HOM05D005198 ORTHO05D006839 7.2e-16 87.8 59 71.2
TPR.G23517 Trifolium pratense HOM05D005198 ORTHO05D006839 7.2e-16 87.8 59 67.8
Lj4A14T50 Lonicera japonica HOM05D005198 ORTHO05D006839 9.5e-16 87.4 59 69.5
Lj1g0021010 Lotus japonicus HOM05D005198 ORTHO05D006839 9.5e-16 87.4 59 71.2
Phvul.003G296400 Phaseolus vulgaris HOM05D005198 ORTHO05D006839 9.5e-16 87.4 59 69.5
GSVIVG01038139001 Vitis vinifera HOM05D005198 ORTHO05D006839 9.5e-16 87.4 59 69.5
Gohir.A02G009975 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.2e-15 87.0 59 69.5
Gohir.D02G010200 Gossypium hirsutum HOM05D005198 ORTHO05D006839 1.2e-15 87.0 59 69.5
Gorai.005G012500 Gossypium raimondii HOM05D005198 ORTHO05D006839 1.2e-15 87.0 59 69.5
Hma1.2p1_0554F.1_g177930 Hydrangea macrophylla HOM05D005198 ORTHO05D006839 1.2e-15 87.0 59 71.2
QL10p055731 Quercus lobata HOM05D005198 ORTHO05D006839 1.2e-15 87.0 59 71.2
Haze_01365 Corylus avellana HOM05D005198 ORTHO05D006839 1.6e-15 86.7 59 71.2
Atru.BG.83.p Acer truncatum HOM05D005198 ORTHO05D006839 2.1e-15 86.3 56 75.0
ECA232G1195 Erigeron canadensis HOM05D005198 ORTHO05D006839 2.1e-15 86.3 59 69.5
Glyma.02G137200 Glycine max HOM05D005198 ORTHO05D006839 2.1e-15 86.3 59 67.8
Glyma.07G208200 Glycine max HOM05D005198 ORTHO05D006839 2.1e-15 86.3 59 67.8
Lalb_Chr16g0384461 Lupinus albus HOM05D005198 ORTHO05D006839 2.1e-15 86.3 59 71.2
SHI30329 Sapria himalayana HOM05D005198 ORTHO05D000023 2.1e-15 86.3 69 60.9
VMungo0251G3269 Vigna mungo HOM05D005198 ORTHO05D006839 2.1e-15 86.3 59 67.8
Lsat_1_v5_gn_9_61481 Lactuca sativa HOM05D005198 ORTHO05D006839 3.6e-15 85.5 59 69.5
HanXRQChr15g0483441 Helianthus annuus HOM05D005198 ORTHO05D006839 4.7e-15 85.1 59 69.5
Lalb_Chr09g0328121 Lupinus albus HOM05D005198 ORTHO05D006839 1.0e-14 84.0 59 69.5
Nitab4.5_0000122g0140 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.4e-14 83.6 60 63.3
Nitab4.5_0011921g0010 Nicotiana tabacum HOM05D005198 ORTHO05D006839 1.4e-14 83.6 60 63.3
Psat7g121400 Pisum sativum HOM05D005198 ORTHO05D006839 5.2e-14 81.6 59 67.8
arahy.Tifrunner.gnm1.ann1.A4X0ZB Arachis hypogaea HOM05D005198 ORTHO05D006839 1.2e-13 80.5 59 66.1
arahy.Tifrunner.gnm1.ann1.Q28JUU Arachis hypogaea HOM05D005198 ORTHO05D006839 1.2e-13 80.5 59 66.1
Pp3c6_14240 Physcomitrium patens HOM05D005198 ORTHO05D006839 1.2e-13 80.5 59 61.0
Mapoly0011s0080 Marchantia polymorpha HOM05D005198 ORTHO05D006839 3.4e-13 79.0 67 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1363 Anthoceros agrestis HOM05D005198 ORTHO05D006839 7.5e-13 77.8 59 61.0
MBI03_g05134_MAGBIO Magnolia biondii HOM05D000360 ORTHO05D000234 9.8e-13 77.4 41 92.7
CBR_g53754 Chara braunii HOM05D005198 ORTHO05D006839 6.3e-12 74.7 59 55.9
MBI14_g40932_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 1.4e-11 73.6 58 67.2
MBI07_g28641_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 9.2e-11 70.9 49 71.4
SMO145G0177 Selaginella moellendorffii HOM05D005198 ORTHO05D006839 9.2e-11 70.9 95 36.8
Hund03196 Selenicereus undatus HOM05D005198 ORTHO05D006839 1.9e-08 63.2 38 78.9
MBI11_g30564_MAGBIO Magnolia biondii HOM05D005198 ORTHO05D006839 3.3e-08 62.4 39 76.9
Nn2g10929 Nelumbo nucifera HOM05D000360 ORTHO05D000234 4.3e-08 62.0 39 79.5
TAR633G1478 Trochodendron aralioides HOM05D000360 ORTHO05D000234 5.6e-08 61.6 42 78.6
QL01p039168 Quercus lobata HOM05D000360 ORTHO05D000234 2.1e-07 59.7 42 73.8
Cre08.g375900 Chlamydomonas reinhardtii HOM05D005198 ORTHO05D006839 2.8e-07 59.3 70 44.3
Aqoxy2G00834 Aquilegia oxysepala HOM05D000360 ORTHO05D000234 3.6e-07 58.9 39 74.4
CSS0046337 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 6.1e-07 58.2 38 68.4
CSS0050366 Camellia sinensis var. sinensis HOM05D005198 ORTHO05D006839 6.1e-07 58.2 38 68.4
Cfa011732 Carpinus fangiana HOM05D000360 ORTHO05D000234 6.1e-07 58.2 33 90.9
Eucgr.H00310 Eucalyptus grandis HOM05D005198 ORTHO05D006839 6.1e-07 58.2 66 48.5
Phvul.008G259200 Phaseolus vulgaris HOM05D000360 ORTHO05D000234 1.0e-06 57.4 41 75.6
Haze_24371 Corylus avellana HOM05D000360 ORTHO05D000234 1.8e-06 56.6 33 87.9
Glyma.11G169300 Glycine max HOM05D000360 ORTHO05D000234 2.3e-06 56.2 33 87.9
Glyma.18G060300 Glycine max HOM05D000360 ORTHO05D000234 2.3e-06 56.2 33 87.9
PGR102G1935 Punica granatum HOM05D000360 ORTHO05D000234 3.0e-06 55.8 34 82.4
Glyma.14G196200 Glycine max HOM05D000360 ORTHO05D000234 4.0e-06 55.5 35 80.0
Lalb_Chr20g0114851 Lupinus albus HOM05D000360 ORTHO05D000234 5.2e-06 55.1 33 84.8
Solyc05g053370.3 Solanum lycopersicum HOM05D000360 ORTHO05D000234 5.2e-06 55.1 40 77.5
Sopen05g031880 Solanum pennellii HOM05D000360 ORTHO05D000234 5.2e-06 55.1 40 77.5
Lj2A1087T14 Lonicera japonica HOM05D000360 ORTHO05D000234 6.8e-06 54.7 35 77.1
VMungo0647G0781 Vigna mungo HOM05D000360 ORTHO05D000234 6.8e-06 54.7 41 70.7
GSVIVG01024696001 Vitis vinifera HOM05D000360 ORTHO05D000234 6.8e-06 54.7 39 74.4
Medtr5g071990 Medicago truncatula HOM05D000360 ORTHO05D000234 8.9e-06 54.3 35 80.0
Phvul.006G070200 Phaseolus vulgaris HOM05D000360 ORTHO05D000234 8.9e-06 54.3 33 81.8
TPR.G18002 Trifolium pratense HOM05D000360 ORTHO05D000234 8.9e-06 54.3 35 80.0


User provided reference genes

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