Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 2.6e-83 312.0 155 100.0
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 2.4e-52 209.1 158 69.0
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 4.2e-49 198.4 135 71.1
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.3e-47 193.4 131 72.5
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 3.0e-47 192.2 129 73.6
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 5.1e-47 191.4 130 68.5
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 1.9e-46 189.5 129 69.8
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 2.5e-46 189.1 128 71.1
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 2.5e-46 189.1 158 64.6
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.5e-46 189.1 120 75.0
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 5.6e-46 188.0 130 70.8
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 7.3e-46 187.6 158 63.3
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 9.6e-46 187.2 159 59.7
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.3e-45 186.8 134 61.9
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.3e-45 186.8 121 71.9
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 1.6e-45 186.4 153 64.1
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.6e-45 186.4 139 64.7
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.1e-45 186.0 121 71.9
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 3.6e-45 185.3 135 65.2
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 3.6e-45 185.3 157 58.0
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 3.6e-45 185.3 132 70.5
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 4.8e-45 184.9 127 69.3
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 4.8e-45 184.9 132 66.7
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 4.8e-45 184.9 148 64.2
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 8.1e-45 184.1 152 61.8
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 8.1e-45 184.1 147 62.6
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 8.1e-45 184.1 156 57.7
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.1e-44 183.7 150 62.7
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.1e-44 183.7 157 59.2
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.1e-44 183.7 149 62.4
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.4e-44 183.3 123 69.9
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.4e-44 183.3 135 65.9
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 1.8e-44 183.0 120 72.5
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 2.4e-44 182.6 127 68.5
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.4e-44 182.6 123 69.9
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 3.1e-44 182.2 132 68.2
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 4.0e-44 181.8 155 57.4
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 4.0e-44 181.8 154 59.1
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 4.0e-44 181.8 132 66.7
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 5.3e-44 181.4 147 61.2
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 5.3e-44 181.4 129 69.8
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 5.3e-44 181.4 159 60.4
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 9.0e-44 180.6 121 71.1
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 9.0e-44 180.6 125 71.2
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.2e-43 180.3 155 58.1
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.2e-43 180.3 146 62.3
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 1.5e-43 179.9 155 56.8
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.5e-43 179.9 147 61.9
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 2.0e-43 179.5 155 58.7
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 2.0e-43 179.5 120 71.7
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 2.6e-43 179.1 121 70.2
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 3.4e-43 178.7 148 61.5
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 3.4e-43 178.7 148 61.5
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 4.4e-43 178.3 156 54.5
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 5.8e-43 177.9 127 67.7
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 5.8e-43 177.9 157 58.6
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 7.6e-43 177.6 148 60.8
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 7.6e-43 177.6 120 68.3
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 9.9e-43 177.2 120 70.8
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.7e-42 176.4 148 60.8
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 1.7e-42 176.4 155 56.1
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.7e-42 176.4 157 56.7
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.7e-42 176.4 157 56.7
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 2.2e-42 176.0 126 64.3
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 2.2e-42 176.0 120 68.3
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.2e-42 176.0 129 65.1
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 2.9e-42 175.6 118 67.8
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.9e-42 175.6 118 68.6
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 3.8e-42 175.3 148 60.1
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 4.9e-42 174.9 118 68.6
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 3.2e-41 172.2 129 63.6
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.4e-41 171.4 130 66.9
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 5.4e-41 171.4 130 65.4
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 5.4e-41 171.4 147 59.2
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 1.2e-40 170.2 149 59.7
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.2e-40 170.2 121 67.8
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 1.2e-40 170.2 121 68.6
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 1.6e-40 169.9 120 72.5
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.1e-40 169.5 124 66.1
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 2.7e-40 169.1 132 63.6
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 2.7e-40 169.1 129 63.6
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 3.5e-40 168.7 123 67.5
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 3.5e-40 168.7 129 64.3
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 4.6e-40 168.3 120 66.7
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 1.0e-39 167.2 144 58.3
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.0e-39 167.2 147 57.8
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 1.3e-39 166.8 127 65.4
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.7e-39 166.4 127 60.6
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 3.0e-39 165.6 146 54.8
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 8.7e-39 164.1 125 64.0
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 3.3e-38 162.2 124 63.7
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 7.3e-38 161.0 118 65.3
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 9.6e-38 160.6 148 57.4
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.6e-37 159.8 154 54.5
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 6.2e-37 157.9 148 56.8
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 8.1e-37 157.5 144 57.6
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.1e-36 157.1 118 63.6
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 1.8e-36 156.4 155 54.8
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 9.0e-36 154.1 120 65.0
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.6e-35 152.5 121 62.8
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 9.9e-35 150.6 160 50.0
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 9.9e-35 150.6 124 61.3
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 1.7e-34 149.8 123 62.6
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 4.9e-34 148.3 129 58.1
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 8.4e-34 147.5 120 60.8
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 3.5e-32 142.1 118 58.5
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 4.8e-29 131.7 111 57.7
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 9.0e-28 127.5 157 43.3
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 7.6e-27 124.4 157 42.7
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 2.9e-26 122.5 142 48.6
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 8.4e-26 120.9 152 42.8
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 3.2e-25 119.0 103 58.3
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 7.9e-24 114.4 112 51.8
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 3.9e-23 112.1 86 59.3
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 4.3e-22 108.6 137 43.8
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 2.2e-18 96.3 82 50.0
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 6.5e-18 94.7 94 53.2
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 8.4e-18 94.4 114 44.7
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 3.5e-16 89.0 121 40.5
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 3.3e-14 82.4 147 35.4
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.4e-12 77.0 93 45.2
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 9.0e-12 74.3 106 41.5
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 2.0e-11 73.2 80 53.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.1e-08 63.2 49 69.4
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 7.4e-06 54.7 52 44.2


User provided reference genes

Program Settings