Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g06719_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D014901 1.1e-40 169.5 86 100.0
AL4G29200 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.0e-08 62.4 56 57.1
AT2G33530 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 2.0e-08 62.4 56 57.1
CARHR127540 Cardamine hirsuta HOM05D000058 ORTHO05D000077 2.0e-08 62.4 56 57.1
MBI11_g11871_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 2.0e-08 62.4 39 74.4
Cc04_g05930 Coffea canephora HOM05D000058 ORTHO05D000077 3.4e-08 61.6 56 55.4
Carub.0004s1516 Capsella rubella HOM05D000058 ORTHO05D000077 4.4e-08 61.2 56 55.4
MBI07_g07342_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000077 4.4e-08 61.2 46 63.0
Hma1.2p1_1070F.1_g254110 Hydrangea macrophylla HOM05D000058 ORTHO05D000077 5.7e-08 60.8 56 55.4
Sc04g0000270 Simmondsia chinensis HOM05D000058 ORTHO05D000077 5.7e-08 60.8 56 53.6
Actinidia22124 Actinidia chinensis HOM05D000058 ORTHO05D000077 7.5e-08 60.5 47 59.6
Dinv23209 Davidia involucrata HOM05D000058 ORTHO05D000077 7.5e-08 60.5 56 55.4
Duzib052G0861 Durio zibethinus HOM05D000058 ORTHO05D000077 7.5e-08 60.5 56 51.8
Thhalv10016623m.g Eutrema salsugineum HOM05D000058 ORTHO05D000077 7.5e-08 60.5 56 55.4
Rhsim12G0018200 Rhododendron simsii HOM05D000058 ORTHO05D000077 7.5e-08 60.5 47 59.6
Sp4g15870 Schrenkiella parvula HOM05D000058 ORTHO05D000077 7.5e-08 60.5 56 53.6
THA.LOC104820534 Tarenaya hassleriana HOM05D000058 ORTHO05D000077 7.5e-08 60.5 56 53.6
TAR622G0419 Trochodendron aralioides HOM05D000058 ORTHO05D000077 7.5e-08 60.5 46 63.0
Aqoxy5G03180 Aquilegia oxysepala HOM05D000058 ORTHO05D000077 9.8e-08 60.1 46 63.0
CSS0015051 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 9.8e-08 60.1 47 59.6
Cpa.g.c32252 Carica papaya HOM05D000058 ORTHO05D000077 9.8e-08 60.1 47 61.7
Lalb_Chr10g0092191 Lupinus albus HOM05D000058 ORTHO05D000077 9.8e-08 60.1 40 67.5
PSO170G6746 Papaver somniferum HOM05D000058 ORTHO05D000077 9.8e-08 60.1 46 60.9
Aa31LG9G13450 Aethionema arabicum HOM05D000058 ORTHO05D000077 1.3e-07 59.7 49 57.1
CDE06G2110 Ceratophyllum demersum HOM05D000058 ORTHO05D006555 1.3e-07 59.7 39 69.2
Glyma.08G257800 Glycine max HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
HanXRQChr16g0498861 Helianthus annuus HOM05D000058 ORTHO05D000077 1.3e-07 59.7 56 50.0
Manes.09G187000 Manihot esculenta HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 61.7
Medtr7g021130 Medicago truncatula HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
Phvul.008G019100 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
Psat3g189440 Pisum sativum HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
TPR.G2899 Trifolium pratense HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
VMungo1383G1402 Vigna mungo HOM05D000058 ORTHO05D000077 1.3e-07 59.7 47 59.6
GSVIVG01004937001 Vitis vinifera HOM05D000058 ORTHO05D000077 1.3e-07 59.7 46 60.9
BcaB02g10570 Brassica carinata HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
BcaC02g11438 Brassica carinata HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
A05p12010 Brassica napus HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
C04p15590 Brassica napus HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
BolC4t23127H Brassica oleracea HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
BraA05t20143Z Brassica rapa HOM05D000058 ORTHO05D000077 1.7e-07 59.3 48 60.4
COL.COLO4_06416 Corchorus olitorius HOM05D000058 ORTHO05D000077 1.7e-07 59.3 56 51.8
Gohir.A11G038300 Gossypium hirsutum HOM05D000058 ORTHO05D000077 1.7e-07 59.3 44 63.6
Nn4g22169 Nelumbo nucifera HOM05D000058 ORTHO05D000077 1.7e-07 59.3 46 60.9
PSO063G6501 Papaver somniferum HOM05D000058 ORTHO05D000077 1.7e-07 59.3 46 60.9
PSO170G4695 Papaver somniferum HOM05D000058 ORTHO05D000077 1.7e-07 59.3 46 60.9
Potri.001G065900 Populus trichocarpa HOM05D000058 ORTHO05D000077 1.7e-07 59.3 40 65.0
unitig_26.g10429 Utricularia gibba HOM05D000058 ORTHO05D000077 1.7e-07 59.3 47 57.4
Actinidia30594 Actinidia chinensis HOM05D000058 ORTHO05D000077 2.2e-07 58.9 47 55.3
CiPaw.05G102700 Carya illinoinensis HOM05D000058 ORTHO05D000077 2.2e-07 58.9 47 57.4
CDE02G1880 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 2.2e-07 58.9 39 69.2
CDE09G0398 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 2.2e-07 58.9 39 69.2
Ca_07086_v3 Cicer arietinum L. HOM05D000058 ORTHO05D000077 2.2e-07 58.9 40 65.0
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 2.2e-07 58.9 46 60.9
GSVIVG01008632001 Vitis vinifera HOM05D000058 ORTHO05D000077 2.2e-07 58.9 46 60.9
AL1G41630 Arabidopsis lyrata HOM05D000058 ORTHO05D000077 2.8e-07 58.5 47 59.6
CSS0019091 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 2.8e-07 58.5 47 59.6
ECA232G3512 Erigeron canadensis HOM05D000058 ORTHO05D000077 2.8e-07 58.5 56 50.0
Gohir.A03G152900 Gossypium hirsutum HOM05D000058 ORTHO05D000077 2.8e-07 58.5 56 51.8
Gorai.005G196500 Gossypium raimondii HOM05D000058 ORTHO05D000077 2.8e-07 58.5 56 51.8
Lsat_1_v5_gn_4_84721 Lactuca sativa HOM05D000058 ORTHO05D000077 2.8e-07 58.5 56 50.0
QL03p049773 Quercus lobata HOM05D000058 ORTHO05D000077 2.8e-07 58.5 47 59.6
Gohir.D11G041600 Gossypium hirsutum HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 61.4
Gorai.007G044700 Gossypium raimondii HOM05D000058 ORTHO05D000077 3.7e-07 58.2 44 61.4
PSO170G1017 Papaver somniferum HOM05D000058 ORTHO05D000077 3.7e-07 58.2 36 69.4
Aa31sc1106G10 Aethionema arabicum HOM05D000058 ORTHO05D000077 4.9e-07 57.8 40 65.0
EL10Ac6g13595 Beta vulgaris HOM05D000058 ORTHO05D000077 4.9e-07 57.8 40 62.5
Carub.0001s2654 Capsella rubella HOM05D000058 ORTHO05D000077 4.9e-07 57.8 40 65.0
Ciclev10031451m.g Citrus clementina HOM05D000058 ORTHO05D000077 4.9e-07 57.8 56 50.0
DCAR_016353 Daucus carota HOM05D000058 ORTHO05D000077 4.9e-07 57.8 56 51.8
Dinv19136 Davidia involucrata HOM05D000058 ORTHO05D000077 4.9e-07 57.8 40 65.0
Gohir.D02G174900 Gossypium hirsutum HOM05D000058 ORTHO05D000077 4.9e-07 57.8 49 55.1
Manes.08G102400 Manihot esculenta HOM05D000058 ORTHO05D000077 4.9e-07 57.8 47 57.4
PSO017G0490 Papaver somniferum HOM05D000058 ORTHO05D000077 4.9e-07 57.8 46 60.9
Potri.003G164000 Populus trichocarpa HOM05D000058 ORTHO05D000077 4.9e-07 57.8 40 62.5
Thecc.02G194500 Theobroma cacao HOM05D000058 ORTHO05D000077 4.9e-07 57.8 49 53.1
TAR374G1221 Trochodendron aralioides HOM05D000058 ORTHO05D000077 4.9e-07 57.8 36 72.2
AT1G28110 Arabidopsis thaliana HOM05D000058 ORTHO05D000077 6.3e-07 57.4 47 57.4
arahy.Tifrunner.gnm1.ann1.UE6VDT Arachis hypogaea HOM05D000058 ORTHO05D014901 6.3e-07 57.4 38 63.2
CARHR027580 Cardamine hirsuta HOM05D000058 ORTHO05D000077 6.3e-07 57.4 47 57.4
AUR62009516 Chenopodium quinoa HOM05D000058 ORTHO05D000077 6.3e-07 57.4 46 54.3
AUR62034772 Chenopodium quinoa HOM05D000058 ORTHO05D000077 6.3e-07 57.4 46 54.3
COL.COLO4_37238 Corchorus olitorius HOM05D000058 ORTHO05D000077 6.3e-07 57.4 46 56.5
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 6.3e-07 57.4 46 60.9
Migut.K01078 Erythranthe guttata HOM05D000058 ORTHO05D000077 6.3e-07 57.4 56 46.4
Thhalv10007573m.g Eutrema salsugineum HOM05D000058 ORTHO05D000077 6.3e-07 57.4 47 57.4
MBI07_g02626_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D014901 6.3e-07 57.4 33 81.8
Os04g0396800 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 6.3e-07 57.4 44 61.4
PSO478G0461 Papaver somniferum HOM05D000058 ORTHO05D000077 6.3e-07 57.4 56 51.8
arahy.Tifrunner.gnm1.ann1.XWIV4W Arachis hypogaea HOM05D000058 ORTHO05D014901 8.3e-07 57.0 38 63.2
Duzib205G1303 Durio zibethinus HOM05D000058 ORTHO05D000077 8.3e-07 57.0 46 56.5
Glyma.18G282200 Glycine max HOM05D000058 ORTHO05D000077 8.3e-07 57.0 47 55.3
Oeu055479.1 Olea europaea HOM05D000058 ORTHO05D000077 8.3e-07 57.0 56 50.0
Rhsim08G0195800 Rhododendron simsii HOM05D000058 ORTHO05D000077 8.3e-07 57.0 56 48.2
PGSC0003DMG400014250 Solanum tuberosum HOM05D000058 ORTHO05D000077 8.3e-07 57.0 52 55.8
TWI36G0112 Tripterygium wilfordii HOM05D000058 ORTHO05D000077 8.3e-07 57.0 56 50.0
arahy.Tifrunner.gnm1.ann1.AHGI2W Arachis hypogaea HOM05D000058 ORTHO05D000077 1.1e-06 56.6 40 60.0
arahy.Tifrunner.gnm1.ann1.EW0CJD Arachis hypogaea HOM05D000058 ORTHO05D014901 1.1e-06 56.6 37 64.9
arahy.Tifrunner.gnm1.ann1.V50231 Arachis hypogaea HOM05D000058 ORTHO05D000077 1.1e-06 56.6 40 60.0
BcaB03g12137 Brassica carinata HOM05D000058 ORTHO05D000077 1.1e-06 56.6 40 62.5
Oeu061246.1 Olea europaea HOM05D000058 ORTHO05D000077 1.1e-06 56.6 49 55.1
Phvul.002G282700 Phaseolus vulgaris HOM05D000058 ORTHO05D000077 1.1e-06 56.6 46 58.7
Sabra03G0119200 Salix brachista HOM05D000058 ORTHO05D000077 1.1e-06 56.6 40 62.5
Sp1g24300 Schrenkiella parvula HOM05D000058 ORTHO05D000077 1.1e-06 56.6 40 62.5
Hund02496 Selenicereus undatus HOM05D000058 ORTHO05D000077 1.1e-06 56.6 46 56.5
Solyc03g118370.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 1.1e-06 56.6 41 68.3
Sopen03g037270 Solanum pennellii HOM05D000058 ORTHO05D000077 1.1e-06 56.6 41 68.3
Zm00001eb084910 Zea mays HOM05D000058 ORTHO05D000077 1.1e-06 56.6 37 67.6
Atru.chr11.2423 Acer truncatum HOM05D000058 ORTHO05D000077 1.4e-06 56.2 40 62.5
Actinidia18314 Actinidia chinensis HOM05D000058 ORTHO05D000077 1.4e-06 56.2 46 54.3
BcaB07g32416 Brassica carinata HOM05D000058 ORTHO05D000077 1.4e-06 56.2 40 60.0
BraA08t34542Z Brassica rapa HOM05D000058 ORTHO05D000077 1.4e-06 56.2 40 60.0
CANSAT01G0771 Cannabis sativa HOM05D000058 ORTHO05D000077 1.4e-06 56.2 47 55.3
CAN.G843.25 Capsicum annuum HOM05D000058 ORTHO05D000077 1.4e-06 56.2 52 51.9
AUR62028852 Chenopodium quinoa HOM05D000058 ORTHO05D000077 1.4e-06 56.2 35 71.4
Potri.015G104700 Populus trichocarpa HOM05D000058 ORTHO05D000077 1.4e-06 56.2 46 56.5
EL10Ac5g11307 Beta vulgaris HOM05D000058 ORTHO05D000077 1.8e-06 55.8 39 61.5
BcaC01g00007 Brassica carinata HOM05D000058 ORTHO05D000077 1.8e-06 55.8 40 62.5
A08p25890 Brassica napus HOM05D000058 ORTHO05D000077 1.8e-06 55.8 40 62.5
C03p74750 Brassica napus HOM05D000058 ORTHO05D000077 1.8e-06 55.8 40 62.5
BolC3t19724H Brassica oleracea HOM05D000058 ORTHO05D000077 1.8e-06 55.8 40 62.5
CSS0015247 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 1.8e-06 55.8 56 46.4
CSS0033604 Camellia sinensis var. sinensis HOM05D000058 ORTHO05D000077 1.8e-06 55.8 56 46.4
Glyma.08G008700 Glycine max HOM05D000058 ORTHO05D000077 1.8e-06 55.8 46 56.5
Oeu003271.1 Olea europaea HOM05D000058 ORTHO05D000077 1.8e-06 55.8 56 48.2
SalBow2G0757 Salvia bowleyana HOM05D000058 ORTHO05D000077 1.8e-06 55.8 56 48.2
Eucgr.B03549 Eucalyptus grandis HOM05D000058 ORTHO05D000077 2.4e-06 55.5 46 54.3
Nitab4.5_0002450g0050 Nicotiana tabacum HOM05D000058 ORTHO05D000077 2.4e-06 55.5 41 63.4
Thecc.03G138400 Theobroma cacao HOM05D000058 ORTHO05D000077 2.4e-06 55.5 39 61.5
BcaC05g26815 Brassica carinata HOM05D000058 ORTHO05D000077 3.1e-06 55.1 40 60.0
A09p37950 Brassica napus HOM05D000058 ORTHO05D000077 3.1e-06 55.1 40 60.0
C05p26810 Brassica napus HOM05D000058 ORTHO05D000077 3.1e-06 55.1 40 60.0
BolC5t31402H Brassica oleracea HOM05D000058 ORTHO05D000077 3.1e-06 55.1 40 60.0
BraA09t39307Z Brassica rapa HOM05D000058 ORTHO05D000077 3.1e-06 55.1 40 60.0
Nitab4.5_0002046g0200 Nicotiana tabacum HOM05D000058 ORTHO05D000077 3.1e-06 55.1 41 63.4
PGR102G1552 Punica granatum HOM05D000058 ORTHO05D000077 3.1e-06 55.1 47 55.3
VMungo0251G0629 Vigna mungo HOM05D000058 ORTHO05D000077 3.1e-06 55.1 46 56.5
Zm00001eb170390 Zea mays HOM05D000058 ORTHO05D000077 3.1e-06 55.1 44 52.3
Os11g0522900 Oryza sativa ssp. japonica HOM05D000058 ORTHO05D000077 4.1e-06 54.7 37 59.5
Sabra12G0077900 Salix brachista HOM05D000058 ORTHO05D000077 4.1e-06 54.7 46 52.2
unitig_749.g13330 Utricularia gibba HOM05D000058 ORTHO05D000077 4.1e-06 54.7 40 57.5
Lj9C485T7 Lonicera japonica HOM05D000058 ORTHO05D000077 5.4e-06 54.3 46 56.5
Potri.012G105500 Populus trichocarpa HOM05D000058 ORTHO05D000077 5.4e-06 54.3 46 54.3
vmacro19165 Vaccinium macrocarpon HOM05D000058 ORTHO05D000077 5.4e-06 54.3 56 44.6
arahy.Tifrunner.gnm1.ann1.88J6KY Arachis hypogaea HOM05D000058 ORTHO05D000077 7.0e-06 53.9 46 56.5
arahy.Tifrunner.gnm1.ann1.QRU1J0 Arachis hypogaea HOM05D000058 ORTHO05D000077 7.0e-06 53.9 46 56.5
Cfa009436 Carpinus fangiana HOM05D000058 ORTHO05D000077 7.0e-06 53.9 47 57.4
Haze_12487 Corylus avellana HOM05D000058 ORTHO05D000077 7.0e-06 53.9 47 57.4
Lj6C836T7 Lonicera japonica HOM05D000058 ORTHO05D000077 7.0e-06 53.9 47 53.2
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 7.0e-06 53.9 41 63.4
Lj1g0022535 Lotus japonicus HOM05D000058 ORTHO05D000077 7.0e-06 53.9 40 60.0
Solyc06g068880.3 Solanum lycopersicum HOM05D000058 ORTHO05D000077 7.0e-06 53.9 49 53.1
Sopen06g026170 Solanum pennellii HOM05D000058 ORTHO05D000077 7.0e-06 53.9 49 53.1
unitig_22.g6381 Utricularia gibba HOM05D000058 ORTHO05D000077 9.2e-06 53.5 44 56.8
HPP92_023031 Vanilla planifolia HOM05D000058 ORTHO05D000077 9.2e-06 53.5 44 52.3


User provided reference genes

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