Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 2.0e-92 342.4 176 100.0
RcHm_v2.0_Chr4g0446331 Rosa chinensis HOM05D008627 ORTHO05D010841 5.6e-50 201.4 169 61.5
FAN17G1667 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.4e-48 196.8 167 62.9
FvH4_4g36570 Fragaria vesca HOM05D008627 ORTHO05D010841 4.0e-48 195.3 169 60.9
FAN07G2611 Fragaria x ananassa HOM05D008627 ORTHO05D010841 5.2e-48 194.9 166 62.0
FAN12G2769 Fragaria x ananassa HOM05D008627 ORTHO05D010841 6.8e-48 194.5 168 60.7
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 3.4e-47 192.2 149 69.1
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 5.8e-47 191.4 149 69.1
Potri.010G096600 Populus trichocarpa HOM05D008627 ORTHO05D010841 5.8e-47 191.4 184 58.2
HanXRQChr06g0175551 Helianthus annuus HOM05D008627 ORTHO05D010841 7.5e-47 191.0 128 75.0
TWI74G0088 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 9.8e-47 190.7 128 75.8
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 1.1e-45 187.2 136 71.3
Sabra10G0069200 Salix brachista HOM05D008627 ORTHO05D010841 1.1e-45 187.2 184 57.1
Prupe.1G344200 Prunus persica HOM05D008627 ORTHO05D010841 4.1e-45 185.3 181 58.0
TWI77G0869 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 4.1e-45 185.3 125 73.6
Ciclev10032846m.g Citrus clementina HOM05D008627 ORTHO05D010841 2.0e-44 183.0 131 68.7
Lsat_1_v5_gn_0_9181 Lactuca sativa HOM05D008627 ORTHO05D010841 2.7e-44 182.6 128 71.1
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 3.5e-44 182.2 128 71.1
Cpa.g.sc953.2 Carica papaya HOM05D008627 ORTHO05D010841 1.0e-43 180.6 173 57.8
COL.COLO4_20905 Corchorus olitorius HOM05D008627 ORTHO05D010841 1.0e-43 180.6 168 60.1
Gohir.D10G133100 Gossypium hirsutum HOM05D008627 ORTHO05D010841 6.6e-43 177.9 121 72.7
MD16G1006400 Malus domestica HOM05D008627 ORTHO05D010841 2.5e-42 176.0 183 55.2
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 3.3e-42 175.6 121 71.1
Gohir.A10G133600 Gossypium hirsutum HOM05D008627 ORTHO05D010841 4.3e-42 175.3 121 71.9
Duzib151G0774 Durio zibethinus HOM05D008627 ORTHO05D010841 5.6e-42 174.9 126 70.6
FAN22G1733 Fragaria x ananassa HOM05D008627 ORTHO05D010841 2.8e-41 172.6 202 50.0
Gorai.011G146800 Gossypium raimondii HOM05D008627 ORTHO05D010841 2.8e-41 172.6 122 72.1
ATR0618G186 Amborella trichopoda HOM05D008627 ORTHO05D010841 6.2e-41 171.4 124 68.5
HPP92_002493 Vanilla planifolia HOM05D008627 ORTHO05D010841 1.8e-40 169.9 125 65.6
CDE05G3193 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 3.1e-40 169.1 175 51.4
PSO017G6499 Papaver somniferum HOM05D008627 ORTHO05D010841 4.6e-36 155.2 183 48.6
PSO478G2256 Papaver somniferum HOM05D008627 ORTHO05D010841 3.0e-35 152.5 186 47.3
AUR62012873 Chenopodium quinoa HOM05D008627 ORTHO05D010841 1.8e-32 143.3 122 65.6
Thecc.04G186000 Theobroma cacao HOM05D008627 ORTHO05D010841 2.0e-31 139.8 102 70.6
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 4.4e-31 138.7 118 59.3
Pp3c5_20280 Physcomitrium patens HOM05D008627 ORTHO05D010841 9.2e-29 131.0 125 52.8
CDE05G0278 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 2.4e-21 106.3 73 69.9
Dinv20704 Davidia involucrata HOM05D008627 ORTHO05D010841 3.0e-19 99.4 79 63.3
Prupe.7G051000 Prunus persica HOM05D008627 ORTHO05D010841 1.3e-17 94.0 66 66.7
Prupe.1G083400 Prunus persica HOM05D008627 ORTHO05D010841 3.6e-17 92.4 64 68.8
Prupe.1G114900 Prunus persica HOM05D008627 ORTHO05D010841 3.6e-17 92.4 64 68.8
Prupe.3G229600 Prunus persica HOM05D008627 ORTHO05D010841 3.6e-17 92.4 64 68.8
Duzib151G0313 Durio zibethinus HOM05D008627 ORTHO05D010841 5.3e-16 88.6 65 66.2
Hund24318 Selenicereus undatus HOM05D008627 ORTHO05D010841 6.9e-16 88.2 63 73.0
Cre12.g559150 Chlamydomonas reinhardtii HOM05D008627 ORTHO05D010841 5.8e-15 85.1 140 37.1
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 1.5e-10 70.5 138 34.8
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 1.5e-10 70.5 138 34.8
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 4.3e-10 68.9 128 36.7
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 5.6e-10 68.6 164 31.1
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 7.4e-10 68.2 128 36.7
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 7.4e-10 68.2 173 30.1
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 9.6e-10 67.8 144 32.6
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 9.6e-10 67.8 144 32.6
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.3e-09 67.4 162 30.2
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 1.6e-09 67.0 116 37.1
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 1.6e-09 67.0 156 30.8
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 2.1e-09 66.6 167 33.5
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 2.1e-09 66.6 118 35.6
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 2.1e-09 66.6 172 30.2
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 2.1e-09 66.6 139 33.1
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 2.8e-09 66.2 118 35.6
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 2.8e-09 66.2 119 35.3
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.7e-09 65.9 139 32.4
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 3.7e-09 65.9 172 32.0
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 3.7e-09 65.9 120 33.3
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 4.8e-09 65.5 144 30.6
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.8e-09 65.5 172 32.6
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 4.8e-09 65.5 176 31.8
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 4.8e-09 65.5 138 32.6
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 6.2e-09 65.1 116 33.6
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 6.2e-09 65.1 116 33.6
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 6.2e-09 65.1 118 35.6
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 6.2e-09 65.1 176 31.8
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 6.2e-09 65.1 128 34.4
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 6.2e-09 65.1 124 32.3
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 6.2e-09 65.1 124 30.6
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 8.1e-09 64.7 119 34.5
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 1.1e-08 64.3 119 34.5
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 1.1e-08 64.3 123 33.3
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.1e-08 64.3 119 34.5
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 1.1e-08 64.3 118 34.7
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 1.4e-08 63.9 118 33.9
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 1.4e-08 63.9 118 33.9
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 1.4e-08 63.9 172 32.0
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 1.4e-08 63.9 116 35.3
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.8e-08 63.5 120 33.3
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 1.8e-08 63.5 118 33.9
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 1.8e-08 63.5 118 33.9
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 1.8e-08 63.5 130 32.3
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 1.8e-08 63.5 119 33.6
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 1.8e-08 63.5 122 32.8
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 1.8e-08 63.5 119 33.6
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 2.4e-08 63.2 127 29.9
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 2.4e-08 63.2 128 32.8
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 2.4e-08 63.2 172 29.7
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 2.4e-08 63.2 118 33.9
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 2.4e-08 63.2 119 33.6
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 2.4e-08 63.2 142 28.9
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 3.1e-08 62.8 116 33.6
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 3.1e-08 62.8 127 29.9
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 3.1e-08 62.8 127 29.9
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 3.1e-08 62.8 127 29.9
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 3.1e-08 62.8 117 32.5
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 3.1e-08 62.8 117 32.5
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 3.1e-08 62.8 129 32.6
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 4.0e-08 62.4 120 33.3
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 5.3e-08 62.0 118 33.1
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 5.3e-08 62.0 122 33.6
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 5.3e-08 62.0 117 32.5
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 5.3e-08 62.0 119 32.8
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 5.3e-08 62.0 119 32.8
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 5.3e-08 62.0 118 33.1
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.9e-08 61.6 117 31.6
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 6.9e-08 61.6 116 30.2
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 6.9e-08 61.6 117 32.5
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 6.9e-08 61.6 127 31.5
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 6.9e-08 61.6 118 33.1
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 6.9e-08 61.6 118 33.1
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 6.9e-08 61.6 116 32.8
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 6.9e-08 61.6 128 33.6
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 6.9e-08 61.6 119 31.9
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 9.0e-08 61.2 125 30.4
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 9.0e-08 61.2 127 29.9
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 9.0e-08 61.2 128 32.0
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 9.0e-08 61.2 118 31.4
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 1.2e-07 60.8 127 29.9
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 1.2e-07 60.8 127 29.9
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 1.2e-07 60.8 127 29.9
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 1.2e-07 60.8 127 29.9
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.2e-07 60.8 120 32.5
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 1.2e-07 60.8 118 31.4
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 1.2e-07 60.8 124 29.8
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 1.2e-07 60.8 119 31.9
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 1.2e-07 60.8 116 32.8
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 1.2e-07 60.8 116 32.8
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 1.2e-07 60.8 119 32.8
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 1.2e-07 60.8 116 32.8
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 1.5e-07 60.5 118 31.4
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 1.5e-07 60.5 120 32.5
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 1.5e-07 60.5 118 32.2
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 1.5e-07 60.5 118 32.2
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.5e-07 60.5 118 33.1
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
CANSAT64G1970 Cannabis sativa HOM05D003846 ORTHO05D004726 2.0e-07 60.1 120 31.7
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 2.0e-07 60.1 116 32.8
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 2.0e-07 60.1 120 31.7
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 2.0e-07 60.1 117 31.6
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 2.6e-07 59.7 118 32.2
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 3.4e-07 59.3 118 31.4
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 3.4e-07 59.3 116 30.2
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 3.4e-07 59.3 126 32.5
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 3.4e-07 59.3 118 32.2
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 3.4e-07 59.3 118 32.2
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 3.4e-07 59.3 153 28.8
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 4.5e-07 58.9 120 31.7
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 4.5e-07 58.9 116 31.9
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 5.8e-07 58.5 115 31.3
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 5.8e-07 58.5 126 31.7
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 5.8e-07 58.5 115 32.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 5.8e-07 58.5 118 31.4
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 7.6e-07 58.2 116 31.9
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 9.9e-07 57.8 128 31.2
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 9.9e-07 57.8 117 32.5
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 1.7e-06 57.0 118 28.8
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 3.8e-06 55.8 118 31.4
Sed0007398 Sechium edule HOM05D003846 ORTHO05D004726 6.4e-06 55.1 84 33.3


User provided reference genes

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