Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 4.4e-245 850.9 439 100.0
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 4.0e-113 412.5 274 78.1
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.7e-111 407.1 289 74.0
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 2.2e-111 406.8 290 74.5
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 2.2e-111 406.8 284 75.0
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 3.7e-111 406.0 292 73.3
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.8e-110 403.7 291 72.2
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.1e-110 402.5 287 72.5
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 5.4e-110 402.1 289 73.4
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.6e-109 400.6 291 71.5
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 2.7e-109 399.8 289 72.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.8e-108 396.0 291 71.8
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.1e-107 394.4 291 71.5
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.5e-104 384.0 292 69.5
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 3.4e-104 382.9 291 68.7
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 5.7e-104 382.1 291 68.7
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 7.5e-104 381.7 292 69.2
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 1.3e-103 380.9 296 67.6
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.1e-102 377.9 290 69.0
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 4.1e-102 375.9 275 72.0
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 4.1e-102 375.9 291 66.3
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 5.4e-102 375.6 291 67.4
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.2e-101 374.4 294 66.7
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.6e-101 374.0 291 68.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.6e-101 374.0 294 67.3
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.5e-101 372.5 291 67.7
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 4.5e-101 372.5 274 73.4
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 5.9e-101 372.1 289 67.1
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 7.8e-101 371.7 299 65.9
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.3e-100 370.9 291 65.3
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.3e-100 370.9 291 65.3
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.7e-100 370.5 291 67.0
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.9e-100 369.4 291 67.7
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.9e-100 369.4 291 67.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 8.6e-100 368.2 291 68.0
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 8.6e-100 368.2 291 66.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.1e-99 367.9 296 66.6
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.5e-99 367.5 285 66.7
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.9e-99 367.1 294 67.3
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.9e-99 367.1 285 67.0
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-99 366.7 291 67.7
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.5e-99 366.7 289 65.1
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.5e-99 366.7 299 65.2
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 3.3e-99 366.3 291 66.7
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.3e-99 366.3 285 66.7
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.3e-99 366.3 288 66.7
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 4.3e-99 365.9 288 66.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 4.3e-99 365.9 294 67.0
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 4.3e-99 365.9 291 65.6
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.3e-99 365.9 285 66.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 5.6e-99 365.5 291 66.0
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 9.5e-99 364.8 291 66.3
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 9.5e-99 364.8 291 66.3
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.6e-98 364.0 291 66.0
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.6e-98 364.0 285 66.3
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-98 364.0 289 67.1
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.6e-98 364.0 287 66.9
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 2.8e-98 363.2 291 65.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 4.7e-98 362.5 292 66.4
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 4.7e-98 362.5 292 66.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 4.7e-98 362.5 293 64.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 6.1e-98 362.1 298 65.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.1e-98 362.1 291 65.6
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 6.1e-98 362.1 289 65.1
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 8.0e-98 361.7 291 66.0
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-97 361.3 291 65.6
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-97 360.9 285 66.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.4e-97 360.9 291 65.6
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.4e-97 360.9 291 66.3
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.8e-97 360.5 280 66.1
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.8e-97 360.5 291 64.3
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.1e-97 359.8 291 64.6
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.1e-97 359.8 321 60.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 4.0e-97 359.4 298 65.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 4.0e-97 359.4 291 63.9
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.0e-97 359.4 291 64.6
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 5.2e-97 359.0 293 63.8
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 6.8e-97 358.6 291 63.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 6.8e-97 358.6 292 64.4
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 6.8e-97 358.6 296 64.9
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 8.9e-97 358.2 291 63.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 8.9e-97 358.2 291 63.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.2e-96 357.8 291 63.9
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-96 357.8 291 64.3
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 1.2e-96 357.8 291 65.3
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-96 357.5 280 65.4
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.5e-96 357.5 297 64.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 1.5e-96 357.5 293 64.2
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.0e-96 357.1 289 65.1
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 2.0e-96 357.1 294 63.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.4e-96 356.3 291 63.6
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.4e-96 356.3 291 64.9
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.4e-96 355.9 293 64.8
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 4.4e-96 355.9 291 63.6
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 4.4e-96 355.9 291 63.6
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 4.4e-96 355.9 291 63.6
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 4.4e-96 355.9 291 63.6
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 5.8e-96 355.5 292 65.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 7.5e-96 355.1 292 65.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 7.5e-96 355.1 293 64.2
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 9.8e-96 354.8 291 64.9
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.8e-96 354.8 293 64.2
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 9.8e-96 354.8 293 64.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 9.8e-96 354.8 288 64.6
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.7e-95 354.0 289 65.4
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.7e-95 354.0 321 58.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.9e-95 353.2 285 64.2
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.9e-95 353.2 280 65.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 2.9e-95 353.2 291 65.3
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.7e-95 352.8 291 62.9
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 3.7e-95 352.8 293 64.8
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 4.9e-95 352.4 288 64.9
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 6.4e-95 352.1 294 65.6
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 8.3e-95 351.7 289 65.7
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 8.3e-95 351.7 297 63.0
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.4e-94 350.1 293 64.8
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.2e-94 349.7 293 64.2
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 3.2e-94 349.7 293 64.8
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 4.1e-94 349.4 291 63.9
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 5.4e-94 349.0 277 67.1
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-93 347.8 290 65.5
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 2.0e-93 347.1 287 65.2
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.7e-93 346.7 280 65.0
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 7.8e-93 345.1 293 64.2
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.3e-92 344.4 278 68.3
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.7e-92 344.0 293 62.5
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.9e-92 342.8 301 62.1
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.0e-92 342.4 301 61.8
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.9e-91 340.5 296 61.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 5.6e-91 339.0 283 63.6
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 5.6e-91 339.0 291 62.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 5.2e-89 332.4 297 61.6
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.0e-88 330.5 294 58.8
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.3e-87 327.8 295 60.7
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.7e-87 326.2 290 59.3
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 3.5e-85 319.7 310 56.8
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.9e-84 316.2 291 59.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 4.3e-83 312.8 291 59.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 4.3e-83 312.8 290 58.6
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 5.6e-83 312.4 294 58.5
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.8e-82 310.1 244 64.3
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.5e-77 293.1 291 55.7
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 8.6e-76 288.5 266 58.3
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.8e-73 280.8 293 55.6
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 8.4e-71 271.9 194 73.2
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.0e-68 263.5 215 66.0
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 1.3e-66 258.1 276 52.9
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 3.6e-66 256.5 270 52.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 6.6e-60 235.7 266 50.0
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 4.0e-57 226.5 284 47.5
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 9.0e-57 225.3 323 43.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 4.8e-50 203.0 134 74.6
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 4.0e-49 199.9 177 59.3
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-47 194.5 167 62.3
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.5e-45 186.8 158 60.8
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.8e-44 184.5 126 72.2
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 4.6e-37 159.8 144 61.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.2e-21 108.6 333 29.7
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 4.7e-21 106.7 110 57.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 3.0e-20 104.0 113 54.9
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 3.7e-18 97.1 111 53.2
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 8.2e-18 95.9 75 64.0
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.5e-14 84.3 97 52.6
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 2.4e-09 67.8 56 57.1
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 1.0e-07 62.4 136 33.1
Ca_04590_v3 Cicer arietinum L. HOM05D005748 ORTHO05D007123 1.3e-07 62.0 128 32.0
Gohir.D01G150000 Gossypium hirsutum HOM05D005748 ORTHO05D007123 3.8e-07 60.5 179 29.6
Gorai.002G186100 Gossypium raimondii HOM05D005748 ORTHO05D007123 3.8e-07 60.5 179 29.6
HanXRQChr12g0371641 Helianthus annuus HOM05D005748 ORTHO05D007123 3.8e-07 60.5 131 35.9
PSO478G3396 Papaver somniferum HOM05D005748 ORTHO05D007123 3.8e-07 60.5 136 33.1
CiPaw.06G069600 Carya illinoinensis HOM05D005748 ORTHO05D007123 6.5e-07 59.7 129 34.1
Ciclev10032509m.g Citrus clementina HOM05D005748 ORTHO05D007123 6.5e-07 59.7 129 35.7
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 6.5e-07 59.7 136 33.8
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 8.5e-07 59.3 71 54.9
Medtr5g033700 Medicago truncatula HOM05D005748 ORTHO05D007123 1.5e-06 58.5 134 30.6
Duzib248G1559 Durio zibethinus HOM05D005748 ORTHO05D007123 1.9e-06 58.2 129 34.1
QL03p058965 Quercus lobata HOM05D005748 ORTHO05D007123 1.9e-06 58.2 129 34.1
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 2.5e-06 57.8 129 32.6
Gohir.A01G160000 Gossypium hirsutum HOM05D005748 ORTHO05D007123 3.2e-06 57.4 128 33.6
Lsat_1_v5_gn_8_154441 Lactuca sativa HOM05D005748 ORTHO05D007123 3.2e-06 57.4 131 32.8
Cpa.g.sc69.82 Carica papaya HOM05D005748 ORTHO05D007123 4.2e-06 57.0 129 35.7
ECA233G4637 Erigeron canadensis HOM05D005748 ORTHO05D007123 4.2e-06 57.0 131 35.1
Lj2g0027284 Lotus japonicus HOM05D005748 ORTHO05D007123 4.2e-06 57.0 129 31.8
Manes.13G027200 Manihot esculenta HOM05D005748 ORTHO05D007123 4.2e-06 57.0 136 30.9
Haze_12219 Corylus avellana HOM05D005748 ORTHO05D007123 5.5e-06 56.6 129 35.7
TAR622G1138 Trochodendron aralioides HOM05D005748 ORTHO05D007123 5.5e-06 56.6 129 33.3


User provided reference genes

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